| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-08-13 22:28 -0400 (Tue, 13 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-08-10 16:01:05 -0400 (Sat, 10 Aug 2024) |
| EndedAt: 2024-08-10 16:04:33 -0400 (Sat, 10 Aug 2024) |
| EllapsedTime: 207.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-08-10 16:01:39.158][biodb::testContext]
biodb.INFO [2024-08-10 16:01:39.162][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:01:39.162][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-08-10 16:01:39.163][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:01:39.164][biodb::testContext]
biodb.INFO [2024-08-10 16:01:39.169][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:01:39.171][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:01:39.176][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:39.177][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:01:39.178][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.181][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:01:39.196][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.199][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:01:39.200][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.203][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:01:39.204][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:01:39.204][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:01:39.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.217][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:01:39.218][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:01:39.219][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.221][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:01:39.222][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:01:39.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.225][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:01:39.226][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:01:39.226][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:01:39.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.229][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:01:39.230][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.233][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:01:39.233][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:01:39.234][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:01:39.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.237][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:01:39.238][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:01:39.238][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:01:39.239][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:01:39.240][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:01:39.240][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:01:39.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.243][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:01:39.244][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:01:39.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.247][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:01:39.248][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:01:39.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.250][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:01:39.251][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:01:39.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.253][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:01:39.254][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:01:39.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.257][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:01:39.258][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:01:39.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.260][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:01:39.261][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:01:39.279][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:01:39.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.282][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:01:39.283][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:01:39.284][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:01:39.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.289][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:01:39.315][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.326][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:01:39.327][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.328][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:39.329][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.331][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.332][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:01:39.333][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:39.334][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.335][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:01:39.335][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:39.336][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.337][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.338][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:39.338][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:39.338][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:39.338][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:01:39.338][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:01:39.339][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:39.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:39.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.344][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.344][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:39.345][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:39.346][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.346][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.347][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:01:39.349][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.349][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:01:39.350][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.351][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:39.351][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.352][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.353][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.354][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.355][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:01:39.355][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:39.356][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.357][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:01:39.358][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:39.358][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.359][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:01:39.360][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:39.361][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.362][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.363][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:39.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.364][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.365][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.366][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.367][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:39.367][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:39.368][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.369][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.370][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:01:39.371][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.372][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:01:39.373][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.374][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:39.374][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.375][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.376][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.377][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:01:39.378][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:39.383][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.384][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:01:39.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:39.386][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.386][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.387][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.388][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:39.389][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.389][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.390][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:39.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.392][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.393][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.394][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:39.395][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:39.395][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.396][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.397][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:01:39.398][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.399][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:01:39.400][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.401][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:39.402][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.402][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.403][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.404][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:01:39.405][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:39.406][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.407][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:01:39.408][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:39.408][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.409][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.410][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.411][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:39.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:39.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.414][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.416][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.416][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:39.417][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:39.418][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.419][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:39.422][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:39.422][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.482][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:01:39.486][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:01:39.487][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:01:39.488][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:01:39.489][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:01:39.490][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:01:39.491][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:01:39.492][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:01:39.493][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:01:39.494][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:01:39.495][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:01:39.496][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:01:39.497][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:01:39.498][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:01:39.499][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:01:39.500][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:01:39.501][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:01:39.502][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:01:39.503][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:01:39.504][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:01:39.505][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:01:39.506][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:01:39.507][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:01:39.508][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:01:39.509][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:01:39.510][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:01:39.511][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:01:39.512][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:01:39.513][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:01:39.514][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:01:39.515][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:01:39.516][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:01:39.517][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:01:39.518][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:01:39.519][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:01:39.520][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:01:39.521][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:01:39.522][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:01:39.523][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:01:39.525][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:01:39.526][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:01:39.527][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:01:39.528][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:01:39.529][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:01:39.530][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:01:39.535][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:01:39.536][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:01:39.537][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:01:39.538][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:01:39.539][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:01:39.540][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:01:39.541][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:01:39.542][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:01:39.543][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:01:39.544][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:01:39.545][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:01:39.546][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:01:39.547][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:01:39.548][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:01:39.550][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:01:39.551][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:01:39.552][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:01:39.553][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:01:39.554][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:01:39.555][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:01:39.556][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:01:39.557][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:01:39.558][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:01:39.559][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:01:39.560][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:01:39.561][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:01:39.562][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:01:39.563][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:01:39.564][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:01:39.566][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:01:39.567][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:01:39.568][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:01:39.569][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:01:39.570][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:01:39.571][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:01:39.572][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:01:39.573][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:01:39.574][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:01:39.579][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:01:39.580][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:01:39.583][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:39.583][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.585][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:39.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:39.669][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-08-10 16:01:39.680][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-08-10 16:01:39.681][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.682][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.683][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.684][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:39.685][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.685][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.686][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.687][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-08-10 16:01:39.687][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:01:39.688][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:39.689][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.690][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-08-10 16:01:39.691][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-08-10 16:01:39.692][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:39.693][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:39.693][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:39.693][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:39.694][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:01:39.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.695][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.696][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:39.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:39.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:39.698][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:39.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:39.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-08-10 16:01:39.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:39.700][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:39.701][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:39.702][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-08-10 16:01:39.702][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-08-10 16:01:39.706][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:01:39.708][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:01:39.709][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-08-10 16:01:39.710][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:01:39.711][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:01:39.713][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:01:39.732][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-08-10 16:01:39.733][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-08-10 16:01:39.737][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-08-10 16:01:39.740][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-08-10 16:01:39.743][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:01:39.744][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:01:39.745][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-08-10 16:01:39.746][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-08-10 16:01:39.753][biodb::testThat]
biodb.INFO [2024-08-10 16:01:39.754][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:01:39.755][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:39.756][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:39.759][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-08-10 16:01:39.760][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:39.763][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:39.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:39.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:39.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.807][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.864][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:39.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:39.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:39.950][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-08-10 16:01:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.147][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.232][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.233][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.257][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.278][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.303][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.355][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.362][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.367][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.372][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.391][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.392][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.397][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.410][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.411][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.417][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.426][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-08-10 16:01:40.463][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:40.464][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:40.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:40.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:40.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:40.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:40.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:40.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:40.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:40.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.497][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.529][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:40.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.554][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.555][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:40.591][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-08-10 16:01:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.703][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.774][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.793][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.836][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.862][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.883][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.969][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.986][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.993][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.999][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.024][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.025][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.037][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.043][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.056][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-08-10 16:01:41.057][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:41.058][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:41.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:41.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:41.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:41.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:41.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:41.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:41.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:41.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.074][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.081][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.106][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:41.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.122][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:41.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:41.170][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-08-10 16:01:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.259][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.347][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.411][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.412][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.431][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.452][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:41.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.494][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:41.495][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:41.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:41.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:41.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:41.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:41.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:41.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:41.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:41.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:41.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:41.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:41.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:41.551][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:41.557][biodb::testThat]
biodb.INFO [2024-08-10 16:01:41.558][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:01:41.559][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:41.559][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:41.561][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-08-10 16:01:41.566][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:01:41.569][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-08-10 16:01:41.571][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-08-10 16:01:41.573][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-08-10 16:01:41.574][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:41.575][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:41.575][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:41.576][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:41.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:41.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:41.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:41.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:41.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:41.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:41.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:41.588][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-08-10 16:01:41.602][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:41.603][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:41.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-08-10 16:01:42.865][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-08-10 16:01:43.522][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:43.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-08-10 16:01:43.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2024-08-10 16:01:43.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2024-08-10 16:01:43.538][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:43.539][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:01:43.540][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:43.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:43.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:43.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:43.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:43.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:43.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:43.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:43.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.565][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.595][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.607][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.613][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:43.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:43.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:43.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:43.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:43.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:43.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:43.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:43.659][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.665][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.666][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.695][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.697][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.698][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.714][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.721][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.722][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:43.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:43.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:43.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:43.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:43.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:43.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:43.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:43.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.767][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.773][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.799][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.810][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:43.881][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-08-10 16:01:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:43.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:43.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:43.923][biodb::testThat]
biodb.INFO [2024-08-10 16:01:43.924][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:01:43.925][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:43.925][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:43.928][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.930][ef$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:43.931][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-08-10 16:01:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:43.967][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-08-10 16:01:43.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-08-10 16:01:43.987][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:43.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-08-10 16:01:43.999][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:44.000][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-08-10 16:01:44.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:44.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:44.015][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:44.030][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:01:44.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:01:45.214][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:45.216][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-08-10 16:01:45.219][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-08-10 16:01:45.221][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-08-10 16:01:45.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:45.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.235][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.237][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:45.241][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.242][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:01:45.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:45.243][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:45.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:45.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:45.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:45.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:45.320][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:45.321][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-08-10 16:01:45.334][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.335][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:01:45.336][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:45.337][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:45.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:45.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:45.431][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.431][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:01:45.432][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:45.433][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.440][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.441][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:01:45.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:45.442][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.450][biodb::testThat]
biodb.INFO [2024-08-10 16:01:45.451][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:01:45.452][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:45.452][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:45.455][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-08-10 16:01:45.937][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-08-10 16:01:47.204][biodb::testThat]
biodb.INFO [2024-08-10 16:01:47.205][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:01:47.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:47.207][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:47.573][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-08-10 16:01:47.949][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:47.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:47.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.954][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:47.956][biodb::testThat]
biodb.INFO [2024-08-10 16:01:47.956][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-08-10 16:01:47.957][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:47.958][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:48.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:48.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:48.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:48.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:01:48.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:48.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:48.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:48.123][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-08-10 16:01:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:01:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:01:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:48.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.180][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:48.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:01:48.182][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:48.184][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:01:48.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:48.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:48.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:48.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:48.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:48.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:48.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:48.195][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-08-10 16:01:48.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:48.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-08-10 16:01:48.237][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:48.238][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:48.238][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:48.239][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:48.240][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:48.241][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:48.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:48.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:48.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:48.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:48.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:48.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:48.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:48.259][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-08-10 16:01:48.261][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:48.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:48.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-08-10 16:01:48.601][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-08-10 16:01:48.937][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:48.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-08-10 16:01:48.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-08-10 16:01:48.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-08-10 16:01:48.945][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:48.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:48.947][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:48.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:48.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:48.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:48.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:48.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:48.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:48.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:48.965][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:48.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:48.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:48.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.971][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:48.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:48.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.973][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:48.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:48.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:48.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:48.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:48.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:48.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.996][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:48.997][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:48.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.000][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:49.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.002][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.013][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:49.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:49.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.019][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:49.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:49.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:49.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:49.067][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-08-10 16:01:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:49.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:49.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:49.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:01:49.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:49.091][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:01:49.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:49.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:49.129][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-08-10 16:01:49.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:49.131][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-08-10 16:01:49.132][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:49.137][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:49.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:49.139][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:49.139][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:49.140][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:49.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:49.151][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-08-10 16:01:49.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:49.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:49.155][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-08-10 16:01:49.496][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-08-10 16:01:49.828][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:49.829][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-08-10 16:01:49.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-08-10 16:01:49.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-08-10 16:01:49.836][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:49.837][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:49.838][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:49.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:49.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.855][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:49.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:49.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.862][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:49.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:49.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:49.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:49.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:49.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:49.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:49.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:49.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.884][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:49.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.903][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:49.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:49.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:49.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.910][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:49.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:49.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:49.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:49.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:49.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:49.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:49.951][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-08-10 16:01:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:49.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:49.979][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:49.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:49.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:49.982][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:01:49.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:49.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:50.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:50.018][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-08-10 16:01:50.018][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:50.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-08-10 16:01:50.021][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:50.022][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:50.022][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:50.023][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:50.024][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:50.025][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:50.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:50.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-08-10 16:01:50.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:50.039][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:50.040][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-08-10 16:01:50.380][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-08-10 16:01:50.712][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:50.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-08-10 16:01:50.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-08-10 16:01:50.719][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-08-10 16:01:50.720][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:50.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:50.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:50.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:50.733][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.739][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:50.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:50.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.741][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.742][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:50.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:50.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:50.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:50.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:50.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:50.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.755][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:50.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.768][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:50.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:50.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:50.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:50.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:50.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:50.814][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-08-10 16:01:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:50.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:50.839][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-08-10 16:01:50.839][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:50.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-08-10 16:01:50.841][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:50.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:50.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:50.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:50.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:50.849][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:50.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:50.860][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-08-10 16:01:50.862][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:50.863][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:50.864][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-08-10 16:01:51.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-08-10 16:01:51.543][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:51.545][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-08-10 16:01:51.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-08-10 16:01:51.549][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-08-10 16:01:51.550][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:51.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:51.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:51.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:51.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.570][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:51.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:51.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.573][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:51.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:51.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:51.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:51.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:51.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.585][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:51.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.591][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:51.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:51.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.598][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:51.599][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:51.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.605][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:51.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:51.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:51.646][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-08-10 16:01:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:51.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:51.670][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-08-10 16:01:51.671][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:51.673][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-08-10 16:01:51.673][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:51.674][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:51.675][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:51.676][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:51.677][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:51.677][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:51.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:51.688][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-08-10 16:01:51.691][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:51.691][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:51.693][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-08-10 16:01:52.032][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-08-10 16:01:52.363][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:52.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-08-10 16:01:52.367][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-08-10 16:01:52.369][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-08-10 16:01:52.370][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:52.371][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:52.372][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:52.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:52.390][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.397][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:52.398][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:52.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:52.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:52.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:52.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:52.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:52.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:52.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:52.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:52.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.414][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:52.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.417][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:52.418][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:52.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.420][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.421][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:52.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:52.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:52.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:52.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:52.468][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-08-10 16:01:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:52.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:52.497][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-08-10 16:01:52.498][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:52.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-08-10 16:01:52.500][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:52.501][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:52.502][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:52.502][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:52.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:52.504][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:52.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:52.515][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-08-10 16:01:52.518][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:52.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:52.520][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-08-10 16:01:52.863][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-08-10 16:01:53.204][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:53.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-08-10 16:01:53.209][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-08-10 16:01:53.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-08-10 16:01:53.213][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:53.214][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:53.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:53.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:53.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:53.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:53.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:53.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:53.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:53.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:53.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.233][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:53.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:53.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.239][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:53.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:53.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:53.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:53.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.272][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:53.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:53.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:53.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:53.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:53.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:53.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:53.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:53.332][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-08-10 16:01:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:53.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:53.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:53.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:53.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:53.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:53.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:53.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:53.355][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-08-10 16:01:53.356][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:53.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-08-10 16:01:53.358][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:53.359][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:53.359][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:53.360][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:53.361][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:53.362][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:53.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:53.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:53.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:53.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:53.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:53.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:53.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:53.372][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-08-10 16:01:53.374][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:53.375][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:53.376][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-08-10 16:01:53.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-08-10 16:01:54.043][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:54.045][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-08-10 16:01:54.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-08-10 16:01:54.049][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-08-10 16:01:54.051][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:54.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:54.053][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:54.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:54.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.070][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:54.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:54.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:54.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:54.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:54.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:54.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:54.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:54.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.107][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:54.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:54.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.125][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:54.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:54.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:54.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:54.166][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-08-10 16:01:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:54.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:54.189][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-08-10 16:01:54.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:54.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-08-10 16:01:54.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:54.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:54.194][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:54.195][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:54.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:54.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:54.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:54.207][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-08-10 16:01:54.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:54.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:54.211][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-08-10 16:01:54.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-08-10 16:01:55.079][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:55.081][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-08-10 16:01:55.094][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-08-10 16:01:55.097][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-08-10 16:01:55.098][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:55.099][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:55.100][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:55.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:55.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.118][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:55.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:55.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:55.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:55.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:55.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:55.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.153][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:55.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.166][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:55.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:55.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.173][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:55.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:55.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:55.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:55.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:55.218][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-08-10 16:01:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:55.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:55.237][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-08-10 16:01:55.242][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:55.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-08-10 16:01:55.244][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:55.245][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:55.246][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:55.247][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:55.248][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:55.249][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:55.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:55.260][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-08-10 16:01:55.262][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:55.262][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:55.263][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-08-10 16:01:55.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-08-10 16:01:55.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:55.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-08-10 16:01:55.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-08-10 16:01:55.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-08-10 16:01:55.949][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:55.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:55.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:55.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:55.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.968][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:55.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:55.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.974][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:55.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:55.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:55.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:55.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.997][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:55.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.016][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.063][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-08-10 16:01:56.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.082][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-08-10 16:01:56.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:56.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-08-10 16:01:56.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:56.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:56.086][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:56.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:56.087][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:56.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:56.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-08-10 16:01:56.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:56.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:56.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-08-10 16:01:56.450][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-08-10 16:01:56.787][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:56.789][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-08-10 16:01:56.792][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-08-10 16:01:56.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-08-10 16:01:56.795][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:56.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:56.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:56.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:56.809][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.816][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:56.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:56.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:56.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:56.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:56.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.830][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.844][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:56.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.913][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-08-10 16:01:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.932][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-08-10 16:01:56.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:56.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-08-10 16:01:56.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:56.936][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:56.937][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:56.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:56.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:56.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:56.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-08-10 16:01:56.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:56.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:56.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-08-10 16:01:57.302][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-08-10 16:01:57.639][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:57.641][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-08-10 16:01:57.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-08-10 16:01:57.646][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-08-10 16:01:57.647][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:57.648][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:57.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:57.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:57.660][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.666][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:57.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:57.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:57.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.672][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:57.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:57.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:57.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:57.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.693][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:57.694][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.705][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:57.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:57.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:57.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:57.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:57.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:57.760][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-08-10 16:01:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:57.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:57.778][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-08-10 16:01:57.779][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:57.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-08-10 16:01:57.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:57.782][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:57.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:57.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:57.784][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:57.785][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:57.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:57.795][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-08-10 16:01:57.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:57.798][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:57.799][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-08-10 16:01:58.133][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-08-10 16:01:58.468][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:58.469][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-08-10 16:01:58.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-08-10 16:01:58.474][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-08-10 16:01:58.475][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:58.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:58.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:58.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:58.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.501][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:58.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:58.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.507][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:58.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:58.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:58.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:58.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:58.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.529][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:58.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:58.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:58.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:58.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:58.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:58.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:58.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.554][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:58.555][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:58.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:58.596][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-08-10 16:01:58.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:58.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:58.617][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-08-10 16:01:58.618][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:58.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-08-10 16:01:58.620][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:58.621][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:58.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:58.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:58.624][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:58.625][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:58.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:58.640][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-08-10 16:01:58.642][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:58.643][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:58.644][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-08-10 16:01:58.988][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-08-10 16:01:59.319][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:59.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-08-10 16:01:59.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-08-10 16:01:59.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-08-10 16:01:59.327][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:59.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:59.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:59.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:59.339][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.353][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:59.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:59.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:59.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.359][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:59.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:59.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:59.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:59.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:59.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:59.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.374][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:59.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.377][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:59.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.386][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:59.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:59.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:59.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:59.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:59.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:59.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.402][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:59.438][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-08-10 16:01:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:59.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:59.456][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-08-10 16:01:59.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:59.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-08-10 16:01:59.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:59.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:59.461][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:59.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:59.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:59.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:59.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:59.474][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-08-10 16:01:59.477][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:59.477][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:59.478][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-08-10 16:01:59.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-08-10 16:02:05.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:05.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-08-10 16:02:05.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-08-10 16:02:05.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-08-10 16:02:05.945][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:05.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:05.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:05.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:05.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:05.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:05.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:05.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:05.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:05.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:05.957][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.963][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:05.963][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:05.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:05.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.969][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:05.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:05.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:05.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:05.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:05.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:05.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:05.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:05.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:05.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.993][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:05.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.996][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:05.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:06.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:06.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:06.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.012][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:06.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:06.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.018][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:06.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:06.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:06.051][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-08-10 16:02:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:06.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:06.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:06.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:06.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:06.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:06.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:06.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:06.073][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-08-10 16:02:06.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:06.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-08-10 16:02:06.077][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:06.078][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:06.079][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:06.079][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:06.080][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:06.081][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:06.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:06.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:06.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:06.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:06.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:06.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:06.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:06.091][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-08-10 16:02:06.093][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:06.094][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:06.095][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-08-10 16:02:06.430][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-08-10 16:02:06.766][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:06.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-08-10 16:02:06.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-08-10 16:02:06.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-08-10 16:02:06.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:06.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:06.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:06.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:06.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:06.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:06.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:06.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:06.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:06.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:06.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.793][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:06.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:06.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.799][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:06.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:06.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:06.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:06.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:06.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:06.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:06.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:06.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:06.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:06.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.821][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:06.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:06.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:06.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.842][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:06.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:06.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:06.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:06.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:06.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:06.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:06.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:06.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:06.890][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-08-10 16:02:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:06.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:06.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:06.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:06.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:06.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:06.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:06.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:06.909][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-08-10 16:02:06.910][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:06.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-08-10 16:02:06.912][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:06.912][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:06.913][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:06.914][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:06.915][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:06.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:06.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:06.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:06.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:06.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:06.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:06.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:06.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:06.931][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-08-10 16:02:06.933][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:06.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:06.935][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-08-10 16:02:07.273][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-08-10 16:02:07.617][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:07.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-08-10 16:02:07.622][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-08-10 16:02:07.624][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-08-10 16:02:07.625][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:07.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:07.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:07.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:07.639][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.645][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:07.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:07.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:07.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:07.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:07.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:07.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:07.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:07.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.674][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:07.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.686][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:07.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:07.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:07.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:07.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:07.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:07.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:07.743][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-08-10 16:02:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:07.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:07.762][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-08-10 16:02:07.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:07.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-08-10 16:02:07.765][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:07.766][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:07.767][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:07.767][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:07.768][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:07.769][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:07.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:07.779][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-08-10 16:02:07.782][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:07.787][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:07.788][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-08-10 16:02:08.124][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-08-10 16:02:08.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:08.458][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-08-10 16:02:08.461][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-08-10 16:02:08.463][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-08-10 16:02:08.465][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:08.465][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:08.466][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:08.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:08.478][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.484][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:08.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:08.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.491][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:08.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:08.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:08.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:08.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:08.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:08.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:08.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.510][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:08.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:08.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.513][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:08.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.526][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:08.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:08.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:08.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:08.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:08.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:08.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:08.582][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-08-10 16:02:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:08.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:08.600][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-08-10 16:02:08.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:08.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-08-10 16:02:08.603][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:08.604][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:08.605][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:08.605][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:08.606][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:08.607][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:08.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:08.617][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-08-10 16:02:08.620][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:08.620][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:08.622][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-08-10 16:02:09.155][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-08-10 16:02:09.521][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:09.523][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-08-10 16:02:09.525][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-08-10 16:02:09.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-08-10 16:02:09.536][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:09.537][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:09.537][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:09.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:09.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.554][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:09.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:09.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.560][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:09.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:09.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:09.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:09.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:09.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:09.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.581][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:09.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.584][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:09.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.593][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:09.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:09.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.599][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:09.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:09.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:09.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:09.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.605][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:09.606][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:09.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:09.646][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-08-10 16:02:09.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:09.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:09.665][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-08-10 16:02:09.666][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:09.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-08-10 16:02:09.668][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:09.669][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:09.669][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:09.670][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:09.671][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:09.672][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:09.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:09.683][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-08-10 16:02:09.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:09.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:09.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-08-10 16:02:10.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-08-10 16:02:10.366][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:10.368][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-08-10 16:02:10.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-08-10 16:02:10.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-08-10 16:02:10.375][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:10.376][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:10.377][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:10.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:10.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.402][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:10.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:10.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.409][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:10.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:10.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:10.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:10.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:10.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.432][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:10.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.445][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:10.446][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:10.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:10.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:10.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:10.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:10.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:10.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:10.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:10.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:10.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:10.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:10.500][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-08-10 16:02:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:10.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:10.519][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-08-10 16:02:10.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:10.521][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-08-10 16:02:10.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:10.522][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:10.523][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:10.524][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:10.525][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:10.525][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:10.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:10.536][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-08-10 16:02:10.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:10.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:10.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-08-10 16:02:10.884][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-08-10 16:02:11.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:11.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-08-10 16:02:11.234][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-08-10 16:02:11.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-08-10 16:02:11.238][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:11.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:11.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:11.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:11.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.263][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:11.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:11.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.269][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:11.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:11.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:11.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:11.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:11.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.291][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:11.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.303][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:11.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:11.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:11.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:11.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:11.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:11.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:11.356][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-08-10 16:02:11.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:11.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:11.374][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-08-10 16:02:11.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:11.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-08-10 16:02:11.377][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:11.378][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:11.379][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:11.380][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:11.380][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:11.381][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:11.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:11.392][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-08-10 16:02:11.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:11.394][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:11.395][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-08-10 16:02:11.739][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-08-10 16:02:12.073][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:12.074][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-08-10 16:02:12.077][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-08-10 16:02:12.079][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-08-10 16:02:12.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:12.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:12.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:12.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.093][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.099][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:12.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:12.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.234][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:12.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:12.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:12.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:12.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:12.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:12.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.255][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:12.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.267][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:12.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:12.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:12.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:12.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:12.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:12.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:12.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:12.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.314][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-08-10 16:02:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:12.343][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:12.344][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:12.345][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:12.346][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:12.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:12.790][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:12.791][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:12.793][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:13.130][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:13.463][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:13.464][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-08-10 16:02:13.467][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-08-10 16:02:13.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:13.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:13.474][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:13.475][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:13.812][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:14.146][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:14.148][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-08-10 16:02:14.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-08-10 16:02:14.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:14.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:14.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:14.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:14.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:14.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:14.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:14.162][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-08-10 16:02:14.163][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:14.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-08-10 16:02:14.165][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:14.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:14.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:14.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:14.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:14.168][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:14.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:14.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:14.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:14.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:14.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:14.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:14.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:14.179][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-08-10 16:02:14.181][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:14.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:14.182][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-08-10 16:02:14.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-08-10 16:02:14.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:14.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-08-10 16:02:14.859][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-08-10 16:02:14.861][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-08-10 16:02:14.862][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:14.863][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:14.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:14.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:14.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:14.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:14.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:14.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:14.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:14.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:14.874][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.880][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:14.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:14.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:14.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:14.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:14.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:14.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:14.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:14.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:14.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.912][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:14.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:14.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:14.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.925][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:14.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:14.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:14.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:14.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:14.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:14.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:14.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:14.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:14.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:14.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:14.973][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-08-10 16:02:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:14.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:14.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:14.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:14.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:14.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:14.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:14.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:14.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:15.010][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-08-10 16:02:15.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:15.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-08-10 16:02:15.012][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:15.013][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:15.014][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:15.015][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:15.016][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:15.016][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:15.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:15.026][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-08-10 16:02:15.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:15.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:15.030][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-08-10 16:02:15.372][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-08-10 16:02:15.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:15.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-08-10 16:02:15.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-08-10 16:02:15.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-08-10 16:02:15.717][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:15.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:15.719][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:15.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.736][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:15.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:15.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.755][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:15.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:15.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:15.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:15.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:15.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:15.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.774][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.775][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:15.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:15.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:15.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:15.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.792][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:15.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:15.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:15.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:15.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:15.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:15.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.833][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-08-10 16:02:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.858][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:15.861][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:15.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:15.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:15.864][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:15.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:15.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.258][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:16.260][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:16.261][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:16.262][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:16.263][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:16.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:16.665][biodb::testThat]
biodb.INFO [2024-08-10 16:02:16.666][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-08-10 16:02:16.666][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:16.667][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.675][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:16.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:16.730][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:16.731][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:02:16.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:16.733][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:02:16.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:16.755][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:16.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:02:16.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:16.759][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:02:16.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:16.795][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:16.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.811][private$selectFields]
biodb.TRACE[2024-08-10 16:02:16.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:16.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:16.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:02:16.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.859][private$selectFields]
biodb.TRACE[2024-08-10 16:02:16.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:16.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:16.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:16.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.898][private$selectFields]
biodb.TRACE[2024-08-10 16:02:16.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:16.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:16.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.907][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:16.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.909][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.910][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:16.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:16.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:16.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:02:16.920][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:16.921][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:16.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:16.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:16.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:16.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:16.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:16.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:16.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:16.933][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:16.935][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:16.936][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:16.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:17.273][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:17.606][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:17.608][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-08-10 16:02:17.611][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-08-10 16:02:17.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:17.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:17.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:17.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:17.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:17.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:17.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:17.622][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-08-10 16:02:17.623][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:17.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-08-10 16:02:17.625][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:17.626][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:17.627][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:17.628][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:17.628][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:17.629][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:17.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:17.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:17.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:17.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:17.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:17.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:17.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:17.641][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-08-10 16:02:17.643][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:17.644][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:17.645][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-08-10 16:02:17.986][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-08-10 16:02:18.319][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:18.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-08-10 16:02:18.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-08-10 16:02:18.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-08-10 16:02:18.327][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:18.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:18.329][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:18.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:18.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:18.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:18.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:18.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:18.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:18.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:18.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.346][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:18.346][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:18.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.352][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:18.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:18.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:18.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:18.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:18.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:18.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.370][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:18.371][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:18.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.373][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:18.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:18.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.385][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:18.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:18.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:18.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.392][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:18.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:18.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.398][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:18.399][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:18.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:18.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:18.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:18.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:18.435][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-08-10 16:02:18.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:18.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:18.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:18.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:18.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:18.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:18.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:18.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:18.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:18.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:18.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:18.453][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-08-10 16:02:18.454][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:18.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-08-10 16:02:18.465][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:18.466][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:18.467][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:18.468][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:18.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:18.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:18.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:18.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:18.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:18.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:18.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:18.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:18.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:18.479][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-08-10 16:02:18.481][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:18.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:18.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-08-10 16:02:18.825][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-08-10 16:02:19.369][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:19.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-08-10 16:02:19.374][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-08-10 16:02:19.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-08-10 16:02:19.377][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:19.378][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:19.379][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:19.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:19.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:19.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:19.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:19.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:19.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:19.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:19.390][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.396][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:19.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:19.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.402][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:19.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:19.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:19.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:19.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.422][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.423][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:19.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:19.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.435][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:19.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:19.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:19.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:19.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:19.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:19.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:19.484][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-08-10 16:02:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:19.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:19.496][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:19.497][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:19.498][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:19.834][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:20.168][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:20.170][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-08-10 16:02:20.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-08-10 16:02:20.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:20.185][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-08-10 16:02:20.186][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:20.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-08-10 16:02:20.188][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:20.189][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:20.190][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:20.190][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:20.191][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:20.192][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:20.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:20.202][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-08-10 16:02:20.204][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:20.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:20.206][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-08-10 16:02:20.544][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-08-10 16:02:20.957][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:20.959][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-08-10 16:02:20.962][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-08-10 16:02:20.963][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-08-10 16:02:20.965][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:20.966][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:20.967][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:20.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:20.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.985][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:20.986][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:20.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:20.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.991][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:20.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:20.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:20.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:20.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:21.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:21.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.017][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:21.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.025][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.029][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:21.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:21.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:21.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.047][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:21.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:21.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:21.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:21.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:21.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:21.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.089][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-08-10 16:02:21.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:21.108][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-08-10 16:02:21.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:21.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-08-10 16:02:21.111][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:21.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:21.112][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:21.113][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:21.114][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:21.114][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:21.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:21.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-08-10 16:02:21.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:21.128][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:21.129][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-08-10 16:02:21.491][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-08-10 16:02:21.826][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:21.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-08-10 16:02:21.831][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-08-10 16:02:21.833][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-08-10 16:02:21.834][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:21.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:21.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:21.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.847][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.853][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:21.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:21.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.860][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:21.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:21.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:21.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:21.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:21.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:21.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:21.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:21.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:21.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.887][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:21.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.899][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:21.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:21.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:21.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:21.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:21.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:21.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:21.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:21.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:21.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:21.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:21.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.949][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-08-10 16:02:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:21.967][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-08-10 16:02:21.968][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:21.969][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-08-10 16:02:21.970][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:21.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:21.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:21.972][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:21.973][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:21.974][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:21.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:21.985][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-08-10 16:02:21.987][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:21.987][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:21.988][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-08-10 16:02:22.328][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-08-10 16:02:22.663][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:22.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-08-10 16:02:22.668][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-08-10 16:02:22.670][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-08-10 16:02:22.671][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:22.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:22.673][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:22.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.698][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:22.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:22.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.700][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:22.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.704][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:22.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:22.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:22.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:22.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:22.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:22.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:22.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:22.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:22.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.724][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:22.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:22.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:22.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:22.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:22.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:22.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.735][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:22.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:22.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.741][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:22.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:22.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:22.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:22.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:22.781][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-08-10 16:02:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:22.806][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:22.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.837][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:22.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.876][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:22.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.914][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.928][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:22.942][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:22.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:22.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:22.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:22.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:22.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:22.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:23.300][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:23.634][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:23.635][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-08-10 16:02:23.638][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-08-10 16:02:23.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:23.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:23.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:23.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:23.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:23.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:23.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:23.649][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-08-10 16:02:23.650][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:23.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-08-10 16:02:23.652][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:23.653][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:23.654][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:23.655][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:23.655][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:23.656][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:23.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:23.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:23.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:23.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:23.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:23.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:23.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:23.666][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-08-10 16:02:23.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:23.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:23.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-08-10 16:02:24.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-08-10 16:02:24.554][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:24.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-08-10 16:02:24.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-08-10 16:02:24.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-08-10 16:02:24.562][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:24.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:24.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:24.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:24.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:24.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:24.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:24.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:24.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:24.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:24.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.581][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:24.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:24.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.587][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:24.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:24.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:24.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:24.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.605][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:24.606][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:24.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.608][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:24.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.620][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:24.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:24.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:24.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:24.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.626][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:24.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:24.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:24.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:24.667][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-08-10 16:02:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:24.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:24.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:24.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:24.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:24.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:24.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:24.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:24.685][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-08-10 16:02:24.686][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:24.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-08-10 16:02:24.688][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:24.689][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:24.690][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:24.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:24.691][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:24.692][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:24.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:24.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:24.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:24.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:24.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:24.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:24.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:24.702][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-08-10 16:02:24.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:24.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:24.706][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-08-10 16:02:25.052][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-08-10 16:02:25.391][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:25.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-08-10 16:02:25.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-08-10 16:02:25.398][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-08-10 16:02:25.399][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:25.401][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:25.401][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:25.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:25.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:25.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:25.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:25.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:25.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:25.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:25.412][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.419][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:25.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:25.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.436][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:25.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:25.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:25.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:25.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:25.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.458][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:25.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.471][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:25.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:25.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:25.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:25.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:25.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:25.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:25.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:25.521][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-08-10 16:02:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:25.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:25.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:25.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:25.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:25.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:25.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:25.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:25.540][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-08-10 16:02:25.541][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:25.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-08-10 16:02:25.543][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:25.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:25.545][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:25.545][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:25.546][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:25.547][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:25.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:25.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:25.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:25.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:25.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:25.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:25.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:25.558][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-08-10 16:02:25.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:25.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:25.561][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-08-10 16:02:25.900][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-08-10 16:02:26.234][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:26.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-08-10 16:02:26.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-08-10 16:02:26.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-08-10 16:02:26.242][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:26.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:26.244][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:26.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:26.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:26.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:26.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:26.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:26.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:26.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:26.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:26.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.267][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:26.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:26.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:26.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:26.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:26.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:26.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:26.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:26.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.289][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:26.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:26.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:26.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.301][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:26.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:26.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.303][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:26.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:26.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:26.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:26.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:26.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:26.349][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-08-10 16:02:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:26.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:26.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:26.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:26.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:26.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:26.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:26.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:26.374][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-08-10 16:02:26.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:26.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-08-10 16:02:26.377][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:26.378][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:26.379][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:26.379][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:26.380][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:26.381][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:26.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:26.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:26.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:26.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:26.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:26.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:26.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:26.392][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-08-10 16:02:26.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:26.395][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:26.396][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-08-10 16:02:26.738][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-08-10 16:02:27.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:27.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-08-10 16:02:27.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-08-10 16:02:27.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-08-10 16:02:27.078][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:27.079][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:27.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:27.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:27.090][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.097][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.103][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.120][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.124][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.142][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:27.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:27.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:27.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:27.183][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-08-10 16:02:27.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:27.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:27.202][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-08-10 16:02:27.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:27.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-08-10 16:02:27.204][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:27.205][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:27.206][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:27.207][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:27.208][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:27.209][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:27.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:27.219][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-08-10 16:02:27.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:27.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:27.223][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-08-10 16:02:27.565][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-08-10 16:02:27.901][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:27.903][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-08-10 16:02:27.906][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-08-10 16:02:27.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-08-10 16:02:27.909][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:27.910][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:27.911][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:27.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:27.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.929][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.930][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.936][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.938][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.960][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.974][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.976][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.987][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:27.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:27.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:28.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.033][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-08-10 16:02:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.052][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-08-10 16:02:28.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:28.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-08-10 16:02:28.055][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:28.055][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:28.056][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:28.057][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:28.058][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:28.059][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:28.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.070][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-08-10 16:02:28.072][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:28.072][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:28.073][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-08-10 16:02:28.412][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-08-10 16:02:28.746][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:28.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-08-10 16:02:28.750][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-08-10 16:02:28.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-08-10 16:02:28.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:28.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:28.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:28.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:28.766][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.773][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:28.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.780][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:28.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:28.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:28.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:28.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:28.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.802][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:28.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:28.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:28.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:28.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:28.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:28.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:28.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:28.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.868][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-08-10 16:02:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.887][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-08-10 16:02:28.888][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:28.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-08-10 16:02:28.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:28.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:28.892][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:28.893][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:28.894][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:28.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:28.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.906][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-08-10 16:02:28.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:28.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:28.910][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-08-10 16:02:29.251][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-08-10 16:02:29.586][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:29.587][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-08-10 16:02:29.590][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-08-10 16:02:29.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-08-10 16:02:29.593][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:29.594][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:29.595][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:29.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:29.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.612][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:29.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:29.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.627][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:29.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:29.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:29.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:29.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:29.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:29.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.645][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:29.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:29.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.648][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:29.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.650][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.659][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:29.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:29.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:29.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:29.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:29.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:29.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:29.705][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-08-10 16:02:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:29.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:29.723][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-08-10 16:02:29.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:29.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-08-10 16:02:29.726][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:29.727][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:29.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:29.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:29.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:29.730][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:29.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:29.740][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-08-10 16:02:29.742][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:29.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:29.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-08-10 16:02:30.083][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-08-10 16:02:30.416][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:30.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-08-10 16:02:30.421][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-08-10 16:02:30.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-08-10 16:02:30.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:30.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:30.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:30.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:30.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:30.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:30.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:30.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:30.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:30.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:30.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.443][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:30.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:30.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:30.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:30.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:30.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:30.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:30.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:30.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:30.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:30.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.471][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:30.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:30.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:30.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:30.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:30.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.490][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:30.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:30.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:30.534][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-08-10 16:02:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:30.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:30.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:30.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:30.557][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:30.887][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:31.235][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:31.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-08-10 16:02:31.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-08-10 16:02:31.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:31.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:31.267][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-08-10 16:02:31.268][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:31.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-08-10 16:02:31.270][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:31.271][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:31.272][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:31.273][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:31.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:31.274][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:31.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:31.285][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-08-10 16:02:31.287][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:31.287][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:31.288][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-08-10 16:02:31.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-08-10 16:02:31.958][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:31.960][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-08-10 16:02:31.962][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-08-10 16:02:31.964][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-08-10 16:02:31.965][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:31.966][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:31.967][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:31.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:31.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:31.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:31.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.990][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:31.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:31.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:31.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:31.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.010][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.036][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:32.069][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-08-10 16:02:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:32.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:32.087][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-08-10 16:02:32.088][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:32.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-08-10 16:02:32.090][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:32.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:32.092][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:32.093][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:32.094][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:32.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:32.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:32.105][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-08-10 16:02:32.107][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:32.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:32.109][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-08-10 16:02:32.453][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-08-10 16:02:32.783][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:32.785][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-08-10 16:02:32.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-08-10 16:02:32.789][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-08-10 16:02:32.790][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:32.791][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:32.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:32.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:32.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:32.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:32.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:32.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:32.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:32.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:32.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.846][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.857][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:32.905][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-08-10 16:02:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:32.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:32.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.932][private$selectFields]
biodb.TRACE[2024-08-10 16:02:32.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:32.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:32.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:02:32.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.970][private$selectFields]
biodb.TRACE[2024-08-10 16:02:32.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:32.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:32.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:32.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:02:32.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.011][private$selectFields]
biodb.TRACE[2024-08-10 16:02:33.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:33.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:33.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.025][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:02:33.035][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:33.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:33.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:33.130][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:33.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:02:33.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:33.133][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:02:33.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:33.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:33.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:02:33.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:33.141][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:02:33.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:33.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.210][private$selectFields]
biodb.TRACE[2024-08-10 16:02:33.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:33.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:33.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.219][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.222][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:02:33.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.270][private$selectFields]
biodb.TRACE[2024-08-10 16:02:33.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:33.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:33.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:33.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.317][private$selectFields]
biodb.TRACE[2024-08-10 16:02:33.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:33.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:33.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:33.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:02:33.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:33.345][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:33.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:33.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:33.357][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:33.358][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:33.359][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:33.696][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:34.028][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:34.029][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-08-10 16:02:34.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-08-10 16:02:34.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:34.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.059][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-08-10 16:02:34.060][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:34.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-08-10 16:02:34.062][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:34.063][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:34.064][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:34.064][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:34.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:34.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:34.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.076][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-08-10 16:02:34.078][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:34.079][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:34.080][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-08-10 16:02:34.438][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-08-10 16:02:34.769][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:34.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-08-10 16:02:34.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-08-10 16:02:34.776][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-08-10 16:02:34.777][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:34.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:34.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:34.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:34.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:34.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:34.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:34.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:34.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:34.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.822][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:34.823][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.826][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:34.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:34.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:34.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.851][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:34.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:34.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:34.887][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-08-10 16:02:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:34.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.906][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-08-10 16:02:34.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:34.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-08-10 16:02:34.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:34.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:34.911][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:34.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:34.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:34.913][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:34.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.925][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-08-10 16:02:34.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:34.928][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:34.929][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-08-10 16:02:38.260][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-08-10 16:02:38.593][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:38.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-08-10 16:02:38.597][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-08-10 16:02:38.599][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-08-10 16:02:38.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:38.601][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:38.602][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:38.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:38.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.629][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:38.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:38.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.635][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:38.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:38.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:38.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:38.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:38.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:38.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.655][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:38.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.666][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:38.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:38.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:38.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:38.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:38.712][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-08-10 16:02:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:38.722][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:38.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.737][private$selectFields]
biodb.TRACE[2024-08-10 16:02:38.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:38.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:38.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.745][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.747][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:38.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.775][private$selectFields]
biodb.TRACE[2024-08-10 16:02:38.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:38.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:38.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.784][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.788][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:02:38.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.814][private$selectFields]
biodb.TRACE[2024-08-10 16:02:38.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:38.815][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:38.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:38.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:02:38.837][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:38.838][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:38.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:38.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:38.851][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:38.852][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:38.853][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:39.191][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:39.525][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:39.526][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-08-10 16:02:39.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-08-10 16:02:39.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:39.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:39.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:39.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:39.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:39.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:39.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:39.551][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-08-10 16:02:39.552][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:39.553][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-08-10 16:02:39.554][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:39.555][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:39.555][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:39.556][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:39.557][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:39.557][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:39.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:39.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:39.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:39.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:39.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:39.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:39.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:39.567][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-08-10 16:02:39.569][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:39.570][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:39.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-08-10 16:02:39.901][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-08-10 16:02:40.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:40.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-08-10 16:02:40.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-08-10 16:02:40.242][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-08-10 16:02:40.244][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:40.244][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:40.245][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:40.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:40.256][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.262][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:40.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:40.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.267][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:40.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:40.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:40.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:40.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:40.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.291][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:40.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.302][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:40.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:40.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:40.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:40.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:40.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:40.315][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:40.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:40.350][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-08-10 16:02:40.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:40.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.368][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-08-10 16:02:40.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:40.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-08-10 16:02:40.371][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:40.372][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:40.373][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:40.373][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:40.374][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:40.375][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:40.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.386][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-08-10 16:02:40.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:40.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:40.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-08-10 16:02:40.727][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-08-10 16:02:41.060][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:41.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-08-10 16:02:41.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-08-10 16:02:41.066][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-08-10 16:02:41.068][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:41.068][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:41.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:41.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:41.080][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.086][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:41.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.092][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:41.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:41.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:41.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.113][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:41.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:41.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:41.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:41.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:41.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.182][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-08-10 16:02:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:41.199][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-08-10 16:02:41.200][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:41.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-08-10 16:02:41.202][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:41.203][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:41.203][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:41.204][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:41.205][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:41.206][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:41.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:41.216][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-08-10 16:02:41.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:41.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:41.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-08-10 16:02:41.551][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-08-10 16:02:42.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:42.109][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-08-10 16:02:42.111][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-08-10 16:02:42.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-08-10 16:02:42.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:42.115][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:42.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:42.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:42.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:42.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:42.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:42.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:42.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:42.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:42.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.161][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:42.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.173][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:42.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:42.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.179][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:42.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:42.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:42.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:42.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.220][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-08-10 16:02:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:42.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.246][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.255][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:02:42.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.290][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.299][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:02:42.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.327][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.340][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:02:42.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:42.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:42.369][biodb::testThat]
biodb.INFO [2024-08-10 16:02:42.369][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-08-10 16:02:42.370][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:42.371][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:42.428][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:42.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:02:42.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:42.433][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:02:42.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:42.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:02:42.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:42.458][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:02:42.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:42.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.510][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.523][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:02:42.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.554][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.564][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:42.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.592][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.602][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.605][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:02:42.616][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:42.617][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:42.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:42.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.630][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:42.631][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:02:42.632][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:42.633][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:02:42.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.669][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:42.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:02:42.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:42.674][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:02:42.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.726][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:42.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.742][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.751][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.755][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:42.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.780][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.790][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.793][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:42.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.823][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.832][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:42.845][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:42.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:42.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:42.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.859][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:42.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:02:42.861][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:42.862][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:02:42.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:42.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:42.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:42.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:43.257][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:43.826][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:43.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-08-10 16:02:43.831][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-08-10 16:02:43.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:43.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:43.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:43.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:43.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:43.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:43.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:43.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:43.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:43.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:43.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:43.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:43.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:43.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:43.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:43.861][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-08-10 16:02:43.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:43.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-08-10 16:02:43.864][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:43.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:43.865][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:43.866][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:43.867][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:43.868][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:43.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:43.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:43.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:43.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:43.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:43.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:43.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:43.878][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-08-10 16:02:43.880][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:43.880][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:43.882][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-08-10 16:02:44.216][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-08-10 16:02:44.548][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:44.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-08-10 16:02:44.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-08-10 16:02:44.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-08-10 16:02:44.556][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:44.557][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:44.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:44.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.574][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:44.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:44.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:44.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:44.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:44.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:44.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:44.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:44.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:44.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.600][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:44.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:44.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.606][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:44.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.618][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:44.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.624][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:44.625][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:44.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:44.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:44.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:44.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.675][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-08-10 16:02:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:44.693][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-08-10 16:02:44.694][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:44.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-08-10 16:02:44.696][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:44.697][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:44.698][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:44.698][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:44.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:44.700][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:44.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:44.711][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-08-10 16:02:44.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:44.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:44.714][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-08-10 16:02:45.049][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-08-10 16:02:45.738][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:45.740][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-08-10 16:02:45.743][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-08-10 16:02:45.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-08-10 16:02:45.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:45.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:45.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:45.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:45.758][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.760][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.764][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:45.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:45.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.770][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:45.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:45.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:45.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:45.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:45.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:45.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.795][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:45.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:45.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.813][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:45.814][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:45.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.856][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-08-10 16:02:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:45.874][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-08-10 16:02:45.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:45.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-08-10 16:02:45.877][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:45.878][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:45.878][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:45.879][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:45.880][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:45.881][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:45.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:45.892][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-08-10 16:02:45.894][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:45.894][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:45.895][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-08-10 16:02:46.227][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-08-10 16:02:46.565][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:46.567][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-08-10 16:02:46.570][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-08-10 16:02:46.572][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-08-10 16:02:46.573][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:46.574][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:46.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:46.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.601][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:46.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.607][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:46.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:46.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:46.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:46.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:46.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.630][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:46.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:46.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:46.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:46.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:46.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.648][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:46.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:46.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.650][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:46.654][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:46.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:46.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.689][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-08-10 16:02:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.699][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:46.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.716][private$selectFields]
biodb.TRACE[2024-08-10 16:02:46.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:46.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:46.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.725][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:02:46.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.753][private$selectFields]
biodb.TRACE[2024-08-10 16:02:46.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:46.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:46.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.766][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-08-10 16:02:46.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.791][private$selectFields]
biodb.TRACE[2024-08-10 16:02:46.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:46.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:46.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.800][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-08-10 16:02:46.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:46.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:46.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:46.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:46.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:02:46.877][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:46.878][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:02:46.881][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:46.883][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:46.884][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:02:46.885][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:46.886][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:02:46.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.937][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:46.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.953][private$selectFields]
biodb.TRACE[2024-08-10 16:02:46.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:46.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:46.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.962][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:02:46.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.991][private$selectFields]
biodb.TRACE[2024-08-10 16:02:46.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:46.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:46.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:46.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.001][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:47.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.032][private$selectFields]
biodb.TRACE[2024-08-10 16:02:47.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:47.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:47.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.042][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:47.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:02:47.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:47.057][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:47.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:47.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:47.071][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:47.072][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:47.073][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:47.405][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:47.737][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:47.738][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-08-10 16:02:47.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-08-10 16:02:47.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:47.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:47.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:47.793][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-08-10 16:02:47.793][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:47.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-08-10 16:02:47.795][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:47.796][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:47.797][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:47.798][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:47.798][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:47.799][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:47.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:47.809][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-08-10 16:02:47.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:47.812][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:47.813][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-08-10 16:02:48.156][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-08-10 16:02:48.494][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:48.496][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-08-10 16:02:48.498][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-08-10 16:02:48.501][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-08-10 16:02:48.502][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:48.503][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:48.503][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:48.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.520][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:48.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:48.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.526][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:48.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:48.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:48.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:48.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:48.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:48.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:48.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:48.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.550][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:48.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:48.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.562][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:48.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.568][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:48.568][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:48.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:48.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:48.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.609][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-08-10 16:02:48.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.618][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:48.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.634][private$selectFields]
biodb.TRACE[2024-08-10 16:02:48.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:48.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:48.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:48.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.673][private$selectFields]
biodb.TRACE[2024-08-10 16:02:48.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:48.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:48.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.681][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.682][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:48.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.719][private$selectFields]
biodb.TRACE[2024-08-10 16:02:48.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:48.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:48.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:48.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-08-10 16:02:48.742][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:48.743][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:48.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.754][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:48.756][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:48.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:02:48.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:48.759][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:02:48.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.819][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-08-10 16:02:48.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:48.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-08-10 16:02:48.822][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:48.823][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:48.824][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:48.824][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:48.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:48.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:48.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.836][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-08-10 16:02:48.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:48.839][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:48.840][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-08-10 16:02:49.172][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-08-10 16:02:49.506][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:49.508][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-08-10 16:02:49.511][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-08-10 16:02:49.512][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-08-10 16:02:49.514][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:49.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:49.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:49.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:49.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.532][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:49.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:49.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:49.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:49.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:49.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:49.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.558][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:49.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.570][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:49.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:49.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.576][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:49.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:49.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:49.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:49.618][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-08-10 16:02:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:49.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:49.643][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-08-10 16:02:49.644][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:49.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-08-10 16:02:49.646][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:49.646][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:49.647][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:49.648][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:49.649][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:49.649][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:49.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:49.660][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-08-10 16:02:49.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:49.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:49.663][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-08-10 16:02:50.011][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-08-10 16:02:50.343][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:50.344][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-08-10 16:02:50.347][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-08-10 16:02:50.349][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-08-10 16:02:50.350][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:50.351][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:50.352][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:50.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:50.362][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.363][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.368][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:50.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:50.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.374][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:50.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:50.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:50.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.392][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:50.392][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:50.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.395][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:50.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:50.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.407][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:50.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:50.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.409][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.413][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:50.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:50.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:50.453][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-08-10 16:02:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:50.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:50.472][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-08-10 16:02:50.472][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:50.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-08-10 16:02:50.475][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:50.475][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:50.476][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:50.477][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:50.478][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:50.478][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:50.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:50.489][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-08-10 16:02:50.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:50.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:50.493][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-08-10 16:02:50.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-08-10 16:02:51.253][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:51.255][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-08-10 16:02:51.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-08-10 16:02:51.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-08-10 16:02:51.261][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:51.262][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:51.263][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:51.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.273][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.280][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:51.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:51.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:51.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:51.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:51.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:51.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.306][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.310][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:51.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.331][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:51.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:51.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:51.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.378][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:51.396][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-08-10 16:02:51.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:51.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-08-10 16:02:51.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:51.399][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:51.400][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:51.401][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:51.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:51.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:51.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:51.412][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-08-10 16:02:51.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:51.415][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:51.416][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-08-10 16:02:51.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-08-10 16:02:52.085][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:52.086][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-08-10 16:02:52.089][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-08-10 16:02:52.091][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-08-10 16:02:52.092][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:52.093][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:52.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:52.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:52.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.110][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:52.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:52.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.116][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:52.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:52.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:52.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:52.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:52.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:52.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:52.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:52.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.136][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:52.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.148][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:52.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:52.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:52.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:52.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:52.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:52.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:52.195][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-08-10 16:02:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:52.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:52.213][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-08-10 16:02:52.214][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:52.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-08-10 16:02:52.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:52.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:52.217][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:52.218][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:52.219][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:52.220][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:52.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:52.230][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-08-10 16:02:52.232][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:52.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:52.233][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-08-10 16:02:52.565][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-08-10 16:02:52.900][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:52.902][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-08-10 16:02:52.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-08-10 16:02:52.906][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-08-10 16:02:52.908][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:52.909][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:52.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:52.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:52.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.935][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:52.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.941][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:52.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:52.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:52.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:52.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:52.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.954][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:52.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:52.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.961][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:52.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:52.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.979][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:52.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:52.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:52.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:52.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:52.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:53.019][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-08-10 16:02:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:53.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:53.037][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-08-10 16:02:53.038][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:53.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-08-10 16:02:53.040][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:53.041][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:53.041][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:53.042][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:53.043][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:53.044][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:53.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:53.054][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-08-10 16:02:53.056][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:53.056][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:53.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-08-10 16:02:53.520][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-08-10 16:02:53.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:53.853][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-08-10 16:02:53.855][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-08-10 16:02:53.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-08-10 16:02:53.858][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:53.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:53.860][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:53.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:53.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.877][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:53.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:53.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.883][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:53.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:53.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:53.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:53.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:53.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.904][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:53.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.916][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:53.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:53.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:53.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:53.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:53.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:53.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.930][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:53.970][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-08-10 16:02:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:53.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:53.988][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-08-10 16:02:53.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:53.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-08-10 16:02:53.991][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:53.992][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:53.993][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:53.994][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:53.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:53.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:53.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:54.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-08-10 16:02:54.008][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:54.009][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:54.010][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-08-10 16:02:54.342][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-08-10 16:02:54.677][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:54.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-08-10 16:02:54.681][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-08-10 16:02:54.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-08-10 16:02:54.684][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:54.685][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:54.686][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:54.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.702][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:54.703][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:54.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.708][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:54.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:54.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:54.715][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.730][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:54.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.742][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:54.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:54.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:54.754][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:54.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.788][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-08-10 16:02:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.798][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:54.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.814][private$selectFields]
biodb.TRACE[2024-08-10 16:02:54.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:54.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:54.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.825][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:02:54.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.854][private$selectFields]
biodb.TRACE[2024-08-10 16:02:54.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:54.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:54.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.867][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-08-10 16:02:54.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.900][private$selectFields]
biodb.TRACE[2024-08-10 16:02:54.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:54.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:54.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:54.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.912][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-08-10 16:02:54.926][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:54.926][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.939][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:54.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:54.945][biodb::testThat]
biodb.INFO [2024-08-10 16:02:54.946][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-08-10 16:02:54.946][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:54.947][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:02:55.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.010][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:02:55.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:02:55.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.059][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:02:55.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:55.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.112][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:02:55.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.150][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:55.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.192][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:02:55.214][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:55.215][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:55.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:02:55.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.231][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:02:55.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.266][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.269][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.270][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:02:55.270][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.271][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:02:55.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.324][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:55.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.340][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:55.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.378][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.387][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:55.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.417][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.422][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.431][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.435][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:55.445][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:55.446][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:55.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.458][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:02:55.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.461][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:02:55.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:02:55.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.601][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:02:55.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.653][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:55.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.668][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.682][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:02:55.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.711][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.722][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:02:55.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.747][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.759][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:02:55.769][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:55.770][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.836][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:02:55.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.838][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:02:55.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:55.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:55.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:02:55.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:55.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:02:55.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.897][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:55.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.912][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.913][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.922][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.925][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:02:55.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.954][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.963][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:55.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.991][private$selectFields]
biodb.TRACE[2024-08-10 16:02:55.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:55.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:55.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:55.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.002][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:02:56.013][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:56.013][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:56.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:56.024][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.026][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:56.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:02:56.028][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:56.029][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:02:56.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.082][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:56.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.098][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:56.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.136][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.148][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:02:56.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.173][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:02:56.201][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:56.202][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:56.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:56.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.215][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:56.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:02:56.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:56.218][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:02:56.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.270][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:56.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.286][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:02:56.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.325][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.330][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.334][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.338][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:02:56.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.363][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:02:56.388][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:56.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.416][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:56.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:56.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.421][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:56.422][biodb::testThat]
biodb.INFO [2024-08-10 16:02:56.423][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-08-10 16:02:56.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:56.424][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.432][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:56.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.487][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:56.488][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:56.489][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:56.827][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:57.322][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:57.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-08-10 16:02:57.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-08-10 16:02:57.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:57.339][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-08-10 16:02:57.340][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:57.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-08-10 16:02:57.342][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:57.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:57.344][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:57.344][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:57.345][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:57.346][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:57.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:57.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-08-10 16:02:57.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:57.359][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:57.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-08-10 16:02:57.693][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-08-10 16:02:58.031][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:58.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-08-10 16:02:58.036][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-08-10 16:02:58.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-08-10 16:02:58.039][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:58.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:58.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:58.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.059][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.083][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.089][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.148][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-08-10 16:02:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:58.166][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-08-10 16:02:58.167][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:58.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-08-10 16:02:58.169][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:58.169][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:58.170][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:58.171][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:58.172][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:58.172][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:58.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:58.183][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-08-10 16:02:58.185][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:58.186][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:58.187][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-08-10 16:02:58.525][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-08-10 16:02:58.861][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:58.888][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-08-10 16:02:58.891][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-08-10 16:02:58.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-08-10 16:02:58.894][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:58.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:58.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:58.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.912][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.941][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.953][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.959][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.002][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-08-10 16:02:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.021][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-08-10 16:02:59.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:59.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-08-10 16:02:59.024][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:59.024][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:59.025][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:59.026][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:59.027][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:59.028][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:59.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.038][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-08-10 16:02:59.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:59.040][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:59.041][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-08-10 16:02:59.391][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-08-10 16:02:59.725][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:59.726][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-08-10 16:02:59.729][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-08-10 16:02:59.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-08-10 16:02:59.732][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:59.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:59.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:59.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:59.744][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.750][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:59.750][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:59.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:59.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:59.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:59.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:59.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:59.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:59.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:59.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.779][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:59.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.792][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:59.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:59.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:59.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:59.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.805][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:59.806][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:59.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.849][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-08-10 16:02:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.867][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-08-10 16:02:59.868][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:59.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-08-10 16:02:59.870][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:59.871][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:59.872][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:59.872][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:59.873][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:59.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:59.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.884][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-08-10 16:02:59.886][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:59.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:59.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-08-10 16:03:00.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-08-10 16:03:00.558][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:00.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-08-10 16:03:00.562][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-08-10 16:03:00.564][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-08-10 16:03:00.565][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:00.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:00.567][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:00.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:00.577][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.583][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:00.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:00.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:00.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.589][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:00.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:00.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:00.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:00.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:00.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.602][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:00.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:00.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.610][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:00.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.622][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:00.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:00.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:00.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:00.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:00.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:00.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:00.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:00.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:00.668][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-08-10 16:03:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:00.677][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:00.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.693][private$selectFields]
biodb.TRACE[2024-08-10 16:03:00.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:00.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:00.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.701][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.702][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.715][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:03:00.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:00.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.731][private$selectFields]
biodb.TRACE[2024-08-10 16:03:00.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:00.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:00.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.740][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.743][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:00.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-08-10 16:03:00.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:00.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.775][private$selectFields]
biodb.TRACE[2024-08-10 16:03:00.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:00.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:00.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.784][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:00.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-08-10 16:03:00.797][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:00.798][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:00.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:00.808][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:00.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:00.811][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:00.813][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:01.148][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:01.486][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:01.488][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-08-10 16:03:01.490][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-08-10 16:03:01.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:01.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:01.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:01.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:01.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:01.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:01.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:01.501][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-08-10 16:03:01.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:01.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-08-10 16:03:01.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:01.505][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:01.505][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:01.506][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:01.507][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:01.507][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:01.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:01.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:01.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:01.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:01.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:01.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:01.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:01.518][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-08-10 16:03:01.520][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:01.520][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:01.521][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-08-10 16:03:01.852][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-08-10 16:03:02.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:02.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-08-10 16:03:02.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-08-10 16:03:02.188][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-08-10 16:03:02.189][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:02.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:02.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:02.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:02.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.207][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:02.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:02.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.212][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:02.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:02.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:02.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:02.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.230][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:02.231][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:02.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.233][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:02.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.244][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:02.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:02.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.247][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:02.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:02.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:02.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:02.290][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-08-10 16:03:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:02.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:02.308][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-08-10 16:03:02.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:02.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-08-10 16:03:02.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:02.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:02.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:02.313][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:02.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:02.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:02.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:02.324][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-08-10 16:03:02.326][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:02.331][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:02.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-08-10 16:03:02.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-08-10 16:03:03.010][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:03.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-08-10 16:03:03.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-08-10 16:03:03.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-08-10 16:03:03.017][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:03.018][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:03.019][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:03.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:03.029][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.036][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.041][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.061][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.062][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.079][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.085][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.086][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.120][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-08-10 16:03:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.138][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-08-10 16:03:03.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:03.140][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-08-10 16:03:03.141][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:03.142][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:03.143][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:03.144][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:03.145][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:03.145][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:03.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.155][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-08-10 16:03:03.157][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:03.158][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:03.159][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-08-10 16:03:03.495][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-08-10 16:03:03.835][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:03.837][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-08-10 16:03:03.839][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-08-10 16:03:03.841][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-08-10 16:03:03.842][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:03.843][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:03.844][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:03.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:03.854][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.860][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.886][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.898][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.952][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-08-10 16:03:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.969][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-08-10 16:03:03.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:03.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-08-10 16:03:03.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:03.972][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:03.973][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:03.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:03.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:03.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:03.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.985][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-08-10 16:03:03.987][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:03.988][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:03.989][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-08-10 16:03:04.324][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-08-10 16:03:04.675][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:04.676][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-08-10 16:03:04.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-08-10 16:03:04.681][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-08-10 16:03:04.682][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:04.683][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:04.684][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:04.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:04.694][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.699][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:04.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:04.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.705][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:04.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:04.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:04.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:04.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:04.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:04.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:04.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:04.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.726][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:04.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:04.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.733][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.737][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:04.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:04.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.743][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:04.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:04.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.745][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:04.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:04.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:04.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:04.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:04.783][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-08-10 16:03:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:04.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:04.800][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-08-10 16:03:04.801][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:04.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-08-10 16:03:04.803][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:04.803][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:04.804][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:04.805][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:04.806][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:04.806][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:04.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:04.816][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-08-10 16:03:04.818][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:04.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:04.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-08-10 16:03:05.152][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-08-10 16:03:05.487][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:05.489][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-08-10 16:03:05.492][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-08-10 16:03:05.494][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-08-10 16:03:05.495][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:05.496][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:05.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:05.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.513][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:05.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:05.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:05.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:05.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:05.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:05.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.552][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:05.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:05.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:05.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.570][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:05.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:05.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.576][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:05.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:05.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.609][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-08-10 16:03:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.627][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-08-10 16:03:05.628][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:05.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-08-10 16:03:05.630][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:05.631][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:05.632][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:05.633][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:05.633][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:05.634][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:05.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.644][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-08-10 16:03:05.646][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:05.647][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:05.648][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-08-10 16:03:05.976][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-08-10 16:03:06.306][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:06.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-08-10 16:03:06.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-08-10 16:03:06.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-08-10 16:03:06.314][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:06.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:06.316][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:06.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.332][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:06.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:06.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:06.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:06.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.338][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:06.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:06.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.359][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:06.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.370][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:06.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:06.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.382][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:06.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:06.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.384][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.415][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-08-10 16:03:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.433][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-08-10 16:03:06.434][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:06.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-08-10 16:03:06.444][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:06.444][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:06.445][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:06.446][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:06.447][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:06.447][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:06.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.457][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-08-10 16:03:06.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:06.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:06.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-08-10 16:03:06.802][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-08-10 16:03:07.136][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:07.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-08-10 16:03:07.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-08-10 16:03:07.142][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-08-10 16:03:07.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:07.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:07.145][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:07.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.155][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.161][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:07.162][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:07.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:07.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:07.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.190][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:07.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.196][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.202][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:07.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:07.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:07.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:07.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:07.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.249][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-08-10 16:03:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.259][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:07.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.274][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.284][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.286][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.287][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-08-10 16:03:07.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.312][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.321][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.325][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-08-10 16:03:07.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.349][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.363][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.370][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-08-10 16:03:07.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:07.380][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:07.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:07.391][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:07.393][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:07.394][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:07.395][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:07.729][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:08.105][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:08.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-08-10 16:03:08.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-08-10 16:03:08.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.120][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-08-10 16:03:08.121][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:08.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-08-10 16:03:08.123][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:08.124][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:08.124][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:08.125][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:08.126][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:08.126][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:08.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.136][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-08-10 16:03:08.138][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:08.139][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:08.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-08-10 16:03:08.474][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-08-10 16:03:08.808][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:08.809][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-08-10 16:03:08.812][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-08-10 16:03:08.814][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-08-10 16:03:08.815][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:08.816][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:08.816][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:08.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:08.827][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.833][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:08.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:08.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.836][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.839][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:08.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:08.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:08.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:08.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:08.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:08.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:08.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:08.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:08.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:08.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:08.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:08.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.861][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:08.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:08.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:08.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.869][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.873][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:08.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:08.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:08.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:08.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:08.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:08.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:08.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:08.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:08.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:08.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:08.920][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-08-10 16:03:08.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:08.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:08.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:08.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:08.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.937][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-08-10 16:03:08.938][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:08.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-08-10 16:03:08.940][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:08.941][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:08.942][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:08.943][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:08.943][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:08.944][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:08.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.954][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-08-10 16:03:08.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:08.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:08.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-08-10 16:03:09.298][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-08-10 16:03:09.628][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:09.630][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-08-10 16:03:09.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-08-10 16:03:09.634][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-08-10 16:03:09.635][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:09.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:09.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:09.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:09.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:09.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:09.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:09.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:09.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:09.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:09.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.653][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:09.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:09.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.670][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:09.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:09.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:09.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:09.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.690][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:09.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.701][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:09.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:09.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:09.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:09.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:09.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:09.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:09.746][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-08-10 16:03:09.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:09.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:09.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:09.758][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:09.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:10.093][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:10.425][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:10.427][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-08-10 16:03:10.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-08-10 16:03:10.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:10.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:10.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:10.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:10.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:10.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:10.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:10.440][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-08-10 16:03:10.441][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:10.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-08-10 16:03:10.443][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:10.444][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:10.445][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:10.445][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:10.446][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:10.447][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:10.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:10.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:10.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:10.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:10.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:10.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:10.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:10.457][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-08-10 16:03:10.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:10.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:10.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-08-10 16:03:10.810][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-08-10 16:03:11.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:11.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-08-10 16:03:11.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-08-10 16:03:11.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-08-10 16:03:11.149][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:11.150][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:11.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:11.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:11.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.167][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:11.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:11.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:11.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.173][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:11.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:11.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:11.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:11.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:11.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.191][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.196][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:11.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.199][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:11.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:11.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:11.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:11.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:11.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:11.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:11.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:11.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:11.264][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-08-10 16:03:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:11.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:11.281][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-08-10 16:03:11.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:11.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-08-10 16:03:11.284][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:11.284][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:11.285][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:11.286][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:11.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:11.287][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:11.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:11.297][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-08-10 16:03:11.299][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:11.300][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:11.301][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-08-10 16:03:11.644][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-08-10 16:03:11.983][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:11.985][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-08-10 16:03:11.987][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-08-10 16:03:11.989][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-08-10 16:03:11.990][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:11.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:11.992][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:11.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.008][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.020][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.031][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.037][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.095][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-08-10 16:03:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:12.113][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-08-10 16:03:12.113][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:12.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-08-10 16:03:12.115][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:12.116][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:12.117][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:12.118][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:12.118][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:12.119][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:12.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:12.129][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-08-10 16:03:12.131][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:12.132][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:12.133][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-08-10 16:03:12.466][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-08-10 16:03:12.802][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:12.804][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-08-10 16:03:12.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-08-10 16:03:12.808][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-08-10 16:03:12.809][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:12.810][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:12.811][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:12.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.828][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.830][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.864][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.922][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-08-10 16:03:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.931][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:12.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.947][private$selectFields]
biodb.TRACE[2024-08-10 16:03:12.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:12.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:12.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.956][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.960][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-08-10 16:03:12.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.986][private$selectFields]
biodb.TRACE[2024-08-10 16:03:12.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:12.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:12.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.995][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-08-10 16:03:13.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.025][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-08-10 16:03:13.049][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:13.050][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:13.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:03:13.081][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.081][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:03:13.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.104][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:03:13.105][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.106][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:03:13.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:13.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.164][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:03:13.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.203][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.213][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.227][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:13.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.243][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:03:13.266][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:13.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:13.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.281][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:03:13.282][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.283][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:03:13.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:03:13.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.326][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:03:13.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.386][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:13.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.402][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.414][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:13.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.440][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.449][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.452][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:13.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.479][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.489][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.492][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:13.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:13.504][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:13.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.516][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.518][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.519][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:03:13.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.521][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:03:13.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.669][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:13.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:03:13.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:13.674][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:03:13.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:13.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:13.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.744][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.753][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.757][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:13.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.783][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:13.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.822][private$selectFields]
biodb.TRACE[2024-08-10 16:03:13.823][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:13.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:13.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.830][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.832][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:13.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:13.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:13.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:13.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:13.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:13.875][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:13.875][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:13.877][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:14.211][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:14.546][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:14.549][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-08-10 16:03:14.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-08-10 16:03:14.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:14.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:14.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:14.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:14.637][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-08-10 16:03:14.638][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:14.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-08-10 16:03:14.641][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:14.642][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:14.643][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:14.643][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:14.644][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:14.645][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:14.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:14.656][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-08-10 16:03:14.658][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:14.659][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:14.660][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-08-10 16:03:14.995][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-08-10 16:03:15.327][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:15.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-08-10 16:03:15.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-08-10 16:03:15.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-08-10 16:03:15.334][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:15.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:15.336][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:15.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.352][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:15.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:15.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:15.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.359][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.379][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.383][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:15.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.395][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.402][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:15.402][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:15.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:15.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.408][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:15.409][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:15.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:15.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.444][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-08-10 16:03:15.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:15.480][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-08-10 16:03:15.481][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:15.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-08-10 16:03:15.483][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:15.484][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:15.485][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:15.485][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:15.486][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:15.487][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:15.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:15.497][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-08-10 16:03:15.499][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:15.500][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:15.501][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-08-10 16:03:15.848][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-08-10 16:03:16.189][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:16.190][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-08-10 16:03:16.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-08-10 16:03:16.195][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-08-10 16:03:16.197][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:16.198][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:16.198][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:16.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:16.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.212][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.226][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:16.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:16.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:16.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:16.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:16.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:16.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:16.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:16.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:16.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.253][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:16.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.256][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:16.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.265][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:16.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:16.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:16.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.277][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:16.278][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:16.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:16.313][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-08-10 16:03:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:16.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:16.332][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-08-10 16:03:16.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:16.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-08-10 16:03:16.335][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:16.336][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:16.337][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:16.338][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:16.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:16.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:16.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:16.350][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-08-10 16:03:16.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:16.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:16.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-08-10 16:03:16.687][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-08-10 16:03:17.021][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:17.023][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-08-10 16:03:17.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-08-10 16:03:17.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-08-10 16:03:17.029][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:17.030][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:17.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:17.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.041][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.047][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:17.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:17.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.053][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.061][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:17.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:17.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:17.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.087][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:17.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:17.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:17.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:17.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:17.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.128][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-08-10 16:03:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:17.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.162][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:17.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.201][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.206][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.210][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.214][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:17.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-08-10 16:03:17.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.240][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:17.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.253][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-08-10 16:03:17.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:17.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:17.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:17.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:17.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:17.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:17.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:17.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:18.041][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:18.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-08-10 16:03:18.046][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-08-10 16:03:18.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.101][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:18.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.118][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.119][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.131][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:18.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.165][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.174][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:18.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.203][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.213][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:18.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:18.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:18.227][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:18.227][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:18.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:18.241][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:18.242][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:18.243][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:18.579][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:18.911][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:18.912][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-08-10 16:03:18.916][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-08-10 16:03:18.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.944][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-08-10 16:03:18.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:18.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-08-10 16:03:18.946][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:18.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:18.948][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:18.949][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:18.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:18.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:18.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.960][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-08-10 16:03:18.963][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:18.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:18.964][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-08-10 16:03:19.297][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-08-10 16:03:19.637][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:19.639][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-08-10 16:03:19.641][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-08-10 16:03:19.643][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-08-10 16:03:19.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:19.646][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:19.647][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:19.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.663][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:19.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:19.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.669][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:19.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:19.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.691][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:19.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:19.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:19.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:19.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:19.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:19.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.759][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-08-10 16:03:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:19.777][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-08-10 16:03:19.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:19.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-08-10 16:03:19.780][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:19.780][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:19.781][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:19.782][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:19.783][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:19.783][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:19.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:19.793][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-08-10 16:03:19.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:19.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:19.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-08-10 16:03:20.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-08-10 16:03:20.468][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:20.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-08-10 16:03:20.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-08-10 16:03:20.474][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-08-10 16:03:20.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:20.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:20.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:20.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.488][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.494][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:20.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:20.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.521][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:20.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.533][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:20.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:20.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:20.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:20.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:20.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.579][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-08-10 16:03:20.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:20.598][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-08-10 16:03:20.598][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:20.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-08-10 16:03:20.600][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:20.601][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:20.602][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:20.603][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:20.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:20.604][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:20.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:20.615][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-08-10 16:03:20.617][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:20.618][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:20.619][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-08-10 16:03:20.958][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-08-10 16:03:21.309][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:21.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-08-10 16:03:21.314][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-08-10 16:03:21.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-08-10 16:03:21.317][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:21.317][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:21.318][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:21.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.329][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.335][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:21.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:21.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:21.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:21.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.341][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.349][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:21.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:21.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.362][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:21.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:21.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:21.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:21.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.390][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:21.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:21.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:21.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:21.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:21.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.430][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-08-10 16:03:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.465][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-08-10 16:03:21.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:21.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-08-10 16:03:21.468][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:21.469][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:21.470][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:21.471][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:21.471][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:21.472][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:21.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.483][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-08-10 16:03:21.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:21.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:21.486][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-08-10 16:03:21.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-08-10 16:03:22.159][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:22.161][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-08-10 16:03:22.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-08-10 16:03:22.165][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-08-10 16:03:22.166][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:22.167][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:22.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:22.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.185][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:22.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.215][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:22.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.228][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:22.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:22.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:22.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:22.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:22.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:22.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.276][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-08-10 16:03:22.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:22.302][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-08-10 16:03:22.303][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:22.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-08-10 16:03:22.305][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:22.306][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:22.307][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:22.308][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:22.308][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:22.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:22.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:22.319][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-08-10 16:03:22.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:22.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:22.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-08-10 16:03:22.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-08-10 16:03:22.991][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:22.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-08-10 16:03:22.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-08-10 16:03:22.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-08-10 16:03:22.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:22.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:23.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:23.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.016][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.036][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.046][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.061][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.065][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.107][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-08-10 16:03:23.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.125][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-08-10 16:03:23.126][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:23.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-08-10 16:03:23.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:23.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:23.129][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:23.130][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:23.131][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:23.132][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:23.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.142][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-08-10 16:03:23.144][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:23.145][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:23.146][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-08-10 16:03:23.496][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-08-10 16:03:23.828][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:23.830][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-08-10 16:03:23.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-08-10 16:03:23.834][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-08-10 16:03:23.835][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:23.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:23.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:23.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.848][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.854][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.860][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.881][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.908][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.915][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.956][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-08-10 16:03:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.974][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-08-10 16:03:23.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:23.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-08-10 16:03:23.977][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:23.978][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:23.979][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:23.980][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:23.980][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:23.981][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:23.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.991][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-08-10 16:03:23.993][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:23.994][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:23.995][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-08-10 16:03:24.328][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-08-10 16:03:24.663][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:24.664][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-08-10 16:03:24.667][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-08-10 16:03:24.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-08-10 16:03:24.670][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:24.671][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:24.672][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:24.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.690][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:24.690][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:24.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.696][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.715][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:24.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:24.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.718][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:24.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:24.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:24.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:24.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:24.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:24.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:24.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:24.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:24.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:24.779][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-08-10 16:03:24.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:24.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:24.797][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-08-10 16:03:24.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:24.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-08-10 16:03:24.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:24.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:24.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:24.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:24.803][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:24.804][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:24.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:24.814][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-08-10 16:03:24.816][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:24.817][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:24.818][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-08-10 16:03:25.148][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-08-10 16:03:25.479][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:25.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-08-10 16:03:25.484][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-08-10 16:03:25.486][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-08-10 16:03:25.496][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:25.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:25.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:25.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.515][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:25.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:25.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.542][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:25.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:25.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:25.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:25.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:25.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:25.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:25.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.602][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-08-10 16:03:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.620][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-08-10 16:03:25.621][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:25.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-08-10 16:03:25.623][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:25.624][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:25.625][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:25.626][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:25.626][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:25.627][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:25.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.637][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-08-10 16:03:25.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:25.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:25.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-08-10 16:03:25.982][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-08-10 16:03:26.321][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:26.322][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-08-10 16:03:26.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-08-10 16:03:26.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-08-10 16:03:26.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:26.329][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:26.330][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:26.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.341][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.347][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:26.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:26.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.349][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.353][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.366][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.375][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:26.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.377][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:26.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:26.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:26.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:26.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.402][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:26.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.445][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-08-10 16:03:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:26.463][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-08-10 16:03:26.463][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:26.464][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-08-10 16:03:26.465][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:26.466][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:26.467][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:26.468][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:26.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:26.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:26.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:26.480][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-08-10 16:03:26.482][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:26.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:26.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-08-10 16:03:26.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-08-10 16:03:27.154][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:27.155][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-08-10 16:03:27.158][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-08-10 16:03:27.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-08-10 16:03:27.161][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:27.162][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:27.163][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:27.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.179][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:27.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:27.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:27.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:27.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.206][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:27.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:27.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.218][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:27.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:27.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:27.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.224][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:27.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:27.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:27.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.266][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-08-10 16:03:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.285][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-08-10 16:03:27.286][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:27.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-08-10 16:03:27.288][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:27.289][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:27.290][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:27.291][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:27.291][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:27.292][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:27.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.303][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-08-10 16:03:27.305][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:27.306][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:27.307][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-08-10 16:03:27.643][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-08-10 16:03:27.975][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:27.976][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-08-10 16:03:27.979][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-08-10 16:03:27.981][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-08-10 16:03:27.982][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:27.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:27.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:27.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.994][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.001][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:28.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:28.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.007][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:28.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:28.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:28.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:28.029][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:28.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:28.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.038][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:28.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:28.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:28.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.052][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:28.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:28.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.058][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:28.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:28.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:28.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:28.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:28.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.096][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-08-10 16:03:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.214][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-08-10 16:03:28.215][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:28.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-08-10 16:03:28.217][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:28.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:28.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:28.219][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:28.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:28.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:28.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.231][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-08-10 16:03:28.233][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:28.233][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:28.234][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-08-10 16:03:28.779][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-08-10 16:03:29.110][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:29.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-08-10 16:03:29.115][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-08-10 16:03:29.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-08-10 16:03:29.118][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:29.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:29.119][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:29.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.130][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.136][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:29.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:29.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:29.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:29.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:29.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:29.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:29.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.171][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:29.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:29.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:29.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:29.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:29.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:29.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:29.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:29.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:29.228][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-08-10 16:03:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:29.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:29.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.263][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-08-10 16:03:29.263][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:29.265][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-08-10 16:03:29.266][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:29.266][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:29.267][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:29.268][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:29.269][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:29.269][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:29.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.279][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-08-10 16:03:29.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:29.282][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:29.283][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-08-10 16:03:29.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-08-10 16:03:29.954][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:29.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-08-10 16:03:29.959][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-08-10 16:03:29.960][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-08-10 16:03:29.962][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:29.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:29.963][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:29.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.974][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.976][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.980][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:29.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:29.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.986][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:29.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:29.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:29.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:29.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:29.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:29.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.007][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.019][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.025][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.027][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.067][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-08-10 16:03:30.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.092][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-08-10 16:03:30.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:30.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-08-10 16:03:30.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:30.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:30.097][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:30.098][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:30.098][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:30.099][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:30.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-08-10 16:03:30.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:30.112][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:30.113][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-08-10 16:03:30.471][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-08-10 16:03:30.802][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:30.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-08-10 16:03:30.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-08-10 16:03:30.808][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-08-10 16:03:30.809][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:30.810][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:30.811][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:30.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.827][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:30.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:30.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.855][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.868][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.874][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.880][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.881][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.916][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-08-10 16:03:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.934][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-08-10 16:03:30.935][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:30.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-08-10 16:03:30.937][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:30.938][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:30.939][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:30.939][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:30.940][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:30.941][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:30.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.951][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-08-10 16:03:30.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:30.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:30.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-08-10 16:03:31.355][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-08-10 16:03:31.684][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:31.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-08-10 16:03:31.689][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-08-10 16:03:31.691][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-08-10 16:03:31.692][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:31.693][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:31.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:31.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.705][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.711][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:31.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:31.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:31.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:31.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:31.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.735][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:31.736][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:31.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.739][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:31.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.741][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.761][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:31.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:31.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:31.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.767][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:31.768][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:31.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:31.774][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:31.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:31.808][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-08-10 16:03:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:31.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.827][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-08-10 16:03:31.828][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:31.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-08-10 16:03:31.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:31.830][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:31.831][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:31.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:31.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:31.833][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:31.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-08-10 16:03:31.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:31.846][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:31.848][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-08-10 16:03:32.185][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-08-10 16:03:32.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:32.519][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-08-10 16:03:32.522][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-08-10 16:03:32.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-08-10 16:03:32.525][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:32.526][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:32.527][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:32.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.537][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.543][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:32.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:32.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.549][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:32.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:32.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.571][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:32.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:32.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.583][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.590][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:32.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:32.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:32.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:32.632][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-08-10 16:03:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:32.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:32.650][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-08-10 16:03:32.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:32.652][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-08-10 16:03:32.653][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:32.654][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:32.654][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:32.655][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:32.656][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:32.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:32.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:32.667][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-08-10 16:03:32.669][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:32.670][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:32.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-08-10 16:03:33.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-08-10 16:03:33.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:33.347][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-08-10 16:03:33.350][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-08-10 16:03:33.352][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-08-10 16:03:33.353][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:33.354][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:33.355][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:33.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.365][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.371][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:33.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:33.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:33.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.377][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.379][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.385][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:33.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.398][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:33.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.409][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:33.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:33.422][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:33.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:33.457][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-08-10 16:03:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:33.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:33.475][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-08-10 16:03:33.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:33.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-08-10 16:03:33.478][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:33.479][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:33.480][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:33.480][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:33.481][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:33.482][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:33.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:33.492][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-08-10 16:03:33.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:33.494][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:33.495][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-08-10 16:03:33.841][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-08-10 16:03:34.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:34.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-08-10 16:03:34.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-08-10 16:03:34.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-08-10 16:03:34.182][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:34.183][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:34.184][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:34.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.201][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:34.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.207][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:34.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:34.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.228][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:34.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.240][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.247][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:34.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:34.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:34.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.299][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-08-10 16:03:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.326][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:34.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.342][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.347][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:34.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.381][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.390][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.394][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:34.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.419][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.420][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.428][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.432][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:34.442][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:34.443][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:34.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:34.471][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:34.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-08-10 16:03:34.473][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:34.474][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-08-10 16:03:34.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.553][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:34.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.569][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:03:34.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.607][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.620][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.630][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-08-10 16:03:34.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.646][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.647][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-08-10 16:03:34.670][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:34.670][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:34.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:34.684][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:34.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-08-10 16:03:34.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:34.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-08-10 16:03:34.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.817][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:34.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.832][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.842][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.845][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-08-10 16:03:34.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.871][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.880][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-08-10 16:03:34.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.909][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.918][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:34.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-08-10 16:03:34.932][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:34.932][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:34.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:34.946][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:34.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-08-10 16:03:34.948][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:34.949][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-08-10 16:03:34.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:34.987][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:34.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-08-10 16:03:34.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:34.990][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-08-10 16:03:34.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.048][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:35.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.064][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.073][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-08-10 16:03:35.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.101][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.110][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.114][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-08-10 16:03:35.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.139][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.152][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-08-10 16:03:35.163][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:35.164][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:35.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.191][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.193][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:03:35.195][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.196][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:03:35.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:03:35.219][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.219][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:03:35.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:35.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.270][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:03:35.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.314][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.315][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.321][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:35.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.351][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.363][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:03:35.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:35.374][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:35.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:03:35.389][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.390][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:03:35.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.428][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:03:35.430][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.431][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:03:35.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.483][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:35.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.499][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:35.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.536][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:35.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.580][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.589][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:35.602][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:35.603][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:35.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.616][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.617][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:03:35.617][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.619][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:03:35.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.758][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:03:35.759][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.760][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:03:35.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.819][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:35.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.834][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.846][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:35.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.871][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.880][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:35.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.911][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:35.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:35.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:35.935][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:35.935][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:35.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.964][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:35.966][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-08-10 16:03:35.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.969][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-08-10 16:03:35.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.082][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:36.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.098][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:36.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.135][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-08-10 16:03:36.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.175][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.184][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-08-10 16:03:36.198][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:36.199][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:36.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:36.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:36.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:36.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-08-10 16:03:36.214][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:36.216][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-08-10 16:03:36.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.274][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:36.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.297][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.303][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.306][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.308][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.312][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:36.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.346][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.355][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.358][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:36.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.383][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:36.405][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:36.406][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:36.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:36.417][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:36.419][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:36.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-08-10 16:03:36.421][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:36.422][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-08-10 16:03:36.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:36.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.921][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.929][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:36.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.959][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:36.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.997][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:36.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:37.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:37.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:37.019][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:37.020][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:37.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:37.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:37.088][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:37.089][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:37.090][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:37.429][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:37.999][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:38.001][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-08-10 16:03:38.004][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-08-10 16:03:38.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.098][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-08-10 16:03:38.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:38.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-08-10 16:03:38.100][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:38.101][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:38.102][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:38.103][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:38.103][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:38.104][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:38.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.114][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-08-10 16:03:38.116][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:38.117][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:38.118][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-08-10 16:03:38.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-08-10 16:03:38.812][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:38.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-08-10 16:03:38.816][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-08-10 16:03:38.818][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-08-10 16:03:38.819][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:38.820][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:38.820][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:38.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.831][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.833][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.837][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:38.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:38.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.843][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.866][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:38.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.884][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:38.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:38.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:38.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:38.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.935][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-08-10 16:03:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.952][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-08-10 16:03:38.952][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:38.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-08-10 16:03:38.954][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:38.955][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:38.956][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:38.957][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:38.957][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:38.958][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:38.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.968][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-08-10 16:03:38.970][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:38.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:38.971][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-08-10 16:03:39.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-08-10 16:03:39.638][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:39.640][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-08-10 16:03:39.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-08-10 16:03:39.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-08-10 16:03:39.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:39.646][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:39.647][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:39.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.663][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:39.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.669][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.694][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:39.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:39.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:39.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:39.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:39.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:39.754][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-08-10 16:03:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:39.765][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:39.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.781][private$selectFields]
biodb.TRACE[2024-08-10 16:03:39.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:39.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:39.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.794][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:03:39.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.820][private$selectFields]
biodb.TRACE[2024-08-10 16:03:39.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:39.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:39.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:39.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.885][private$selectFields]
biodb.TRACE[2024-08-10 16:03:39.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:39.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:39.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:39.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:39.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-08-10 16:03:39.909][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:39.909][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:39.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:39.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:39.922][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:39.923][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:39.924][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:40.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:40.921][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:40.923][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-08-10 16:03:40.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-08-10 16:03:40.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:40.939][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-08-10 16:03:40.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:40.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-08-10 16:03:40.942][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:40.943][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:40.943][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:40.944][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:40.945][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:40.946][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:40.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:40.957][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-08-10 16:03:40.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:40.959][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:40.961][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-08-10 16:03:41.590][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-08-10 16:03:41.924][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:41.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-08-10 16:03:41.929][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-08-10 16:03:41.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-08-10 16:03:41.932][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:41.932][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:41.933][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:41.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:41.944][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.950][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:41.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:41.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.980][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:41.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.993][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.005][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.043][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-08-10 16:03:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.089][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-08-10 16:03:42.090][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:42.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-08-10 16:03:42.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:42.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:42.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:42.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:42.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:42.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:42.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-08-10 16:03:42.108][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:42.108][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:42.109][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-08-10 16:03:42.443][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-08-10 16:03:42.775][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:42.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-08-10 16:03:42.779][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-08-10 16:03:42.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-08-10 16:03:42.782][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:42.783][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:42.784][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:42.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.800][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:42.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:42.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.806][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.830][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:42.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.842][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.888][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-08-10 16:03:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:42.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.931][private$selectFields]
biodb.TRACE[2024-08-10 16:03:42.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:42.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:42.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.936][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-08-10 16:03:42.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.969][private$selectFields]
biodb.TRACE[2024-08-10 16:03:42.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:42.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:42.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:42.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:43.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:43.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:43.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:43.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:43.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:43.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:43.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:43.016][private$selectFields]
biodb.TRACE[2024-08-10 16:03:43.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:43.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:43.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:43.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:43.025][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:43.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:43.039][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:43.040][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:43.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:43.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:43.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:43.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:43.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:43.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:43.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:43.051][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:43.053][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:43.054][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:43.055][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:43.387][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:43.961][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:43.963][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-08-10 16:03:43.966][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-08-10 16:03:43.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:43.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:43.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:43.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:43.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:43.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:43.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:43.977][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-08-10 16:03:43.978][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:43.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-08-10 16:03:43.980][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:43.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:43.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:43.982][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:43.983][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:43.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:43.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:43.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:43.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:43.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:43.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:43.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:43.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:43.996][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-08-10 16:03:43.998][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:43.999][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:44.000][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-08-10 16:03:44.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-08-10 16:03:44.904][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:44.905][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-08-10 16:03:44.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-08-10 16:03:44.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-08-10 16:03:44.911][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:44.912][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:44.913][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:44.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:44.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:44.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:44.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:44.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:44.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:44.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:44.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:44.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:44.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.929][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:44.930][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:44.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:44.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:44.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:44.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:44.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:44.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:44.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.956][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:44.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:44.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:44.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:44.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.968][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:44.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:44.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:44.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:44.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.976][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:44.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:44.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:44.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.014][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-08-10 16:03:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.032][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-08-10 16:03:45.033][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:45.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-08-10 16:03:45.035][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:45.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:45.037][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:45.037][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:45.038][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:45.039][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:45.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.061][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-08-10 16:03:45.063][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:45.064][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:45.065][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-08-10 16:03:45.404][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-08-10 16:03:45.735][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:45.736][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-08-10 16:03:45.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-08-10 16:03:45.741][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-08-10 16:03:45.742][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:45.743][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:45.743][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:45.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:45.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.759][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:45.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:45.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.765][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:45.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:45.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:45.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:45.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.773][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:45.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.785][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:45.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.797][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:45.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:45.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:45.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:45.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:45.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.843][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-08-10 16:03:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.860][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-08-10 16:03:45.861][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:45.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-08-10 16:03:45.863][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:45.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:45.865][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:45.865][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:45.866][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:45.867][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:45.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.877][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-08-10 16:03:45.879][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:45.880][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:45.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-08-10 16:03:46.211][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-08-10 16:03:46.544][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:46.545][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-08-10 16:03:46.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-08-10 16:03:46.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-08-10 16:03:46.551][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:46.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:46.553][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:46.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:46.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.570][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:46.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.576][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:46.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:46.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:46.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:46.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:46.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.597][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:46.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:46.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.609][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:46.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:46.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:46.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:46.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:46.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:46.665][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-08-10 16:03:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:46.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:46.682][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-08-10 16:03:46.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:46.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-08-10 16:03:46.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:46.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:46.686][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:46.687][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:46.688][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:46.688][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:46.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:46.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-08-10 16:03:46.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:46.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:46.702][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-08-10 16:03:47.033][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-08-10 16:03:47.371][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:47.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-08-10 16:03:47.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-08-10 16:03:47.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-08-10 16:03:47.379][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:47.379][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:47.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:47.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.391][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.397][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:47.398][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:47.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:47.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.405][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:47.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:47.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:47.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.426][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:47.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.429][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.435][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.439][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:47.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:47.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.445][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:47.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:47.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.486][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-08-10 16:03:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:47.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.528][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-08-10 16:03:47.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.575][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-08-10 16:03:47.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.613][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-08-10 16:03:47.637][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:47.638][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:47.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:47.664][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:47.667][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:47.668][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:03:47.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:47.670][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:03:47.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:47.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:47.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:03:47.676][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:47.678][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:03:47.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.731][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:47.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.747][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.759][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:03:47.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.785][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.794][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:47.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.829][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.838][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:03:47.852][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:47.853][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:47.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:47.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:47.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:47.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:03:47.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:47.869][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:03:47.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.925][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:47.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.948][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.957][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.958][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.962][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:47.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.991][private$selectFields]
biodb.TRACE[2024-08-10 16:03:47.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:47.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:47.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:47.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.002][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:48.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:03:48.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.032][private$selectFields]
biodb.TRACE[2024-08-10 16:03:48.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:48.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:48.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.043][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:03:48.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:48.057][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:48.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:48.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:48.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:48.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:03:48.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:48.081][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:03:48.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:48.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.150][private$selectFields]
biodb.TRACE[2024-08-10 16:03:48.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:48.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:48.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.163][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:03:48.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.189][private$selectFields]
biodb.TRACE[2024-08-10 16:03:48.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:48.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:48.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.198][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.202][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:03:48.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.227][private$selectFields]
biodb.TRACE[2024-08-10 16:03:48.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:48.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:48.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.236][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:48.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.240][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:03:48.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:48.251][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:48.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:48.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:48.280][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:48.281][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:48.282][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:48.858][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:49.201][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:49.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-08-10 16:03:49.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-08-10 16:03:49.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:49.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:49.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:49.260][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-08-10 16:03:49.261][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:49.262][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-08-10 16:03:49.263][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:49.264][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:49.264][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:49.265][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:49.266][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:49.267][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:49.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:49.277][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-08-10 16:03:49.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:49.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:49.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-08-10 16:03:49.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-08-10 16:03:49.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:49.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-08-10 16:03:49.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-08-10 16:03:49.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-08-10 16:03:49.955][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:49.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:49.956][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:49.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:49.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.973][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:49.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:49.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:49.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:49.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:49.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:49.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:49.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:49.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:49.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:49.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.004][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.016][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.063][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-08-10 16:03:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.080][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-08-10 16:03:50.081][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:50.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-08-10 16:03:50.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:50.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:50.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:50.085][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:50.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:50.087][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:50.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.097][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-08-10 16:03:50.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:50.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:50.101][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-08-10 16:03:50.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-08-10 16:03:50.770][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:50.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-08-10 16:03:50.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-08-10 16:03:50.776][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-08-10 16:03:50.777][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:50.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:50.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:50.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:50.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.796][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:50.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:50.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:50.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:50.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:50.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:50.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.826][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.849][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.855][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.861][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.897][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-08-10 16:03:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.915][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-08-10 16:03:50.915][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:50.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-08-10 16:03:50.917][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:50.918][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:50.919][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:50.920][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:50.920][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:50.921][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:50.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.931][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-08-10 16:03:50.933][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:50.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:50.935][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-08-10 16:03:51.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-08-10 16:03:51.741][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:51.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-08-10 16:03:51.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-08-10 16:03:51.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-08-10 16:03:51.748][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:51.749][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:51.750][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:51.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:51.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.767][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:51.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.773][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:51.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:51.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:51.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:51.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.792][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.797][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:51.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.808][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:51.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:51.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:51.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:51.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:51.856][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-08-10 16:03:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:51.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:51.874][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-08-10 16:03:51.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:51.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-08-10 16:03:51.877][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:51.878][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:51.878][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:51.879][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:51.880][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:51.881][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:51.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:51.900][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-08-10 16:03:51.902][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:51.903][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:51.904][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-08-10 16:03:52.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-08-10 16:03:52.571][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:52.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-08-10 16:03:52.576][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-08-10 16:03:52.577][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-08-10 16:03:52.579][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:52.579][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:52.580][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:52.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:52.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.597][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:52.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:52.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:52.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:52.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:52.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:52.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:52.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.621][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.626][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:52.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.639][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:52.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:52.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:52.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:52.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:52.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:52.687][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-08-10 16:03:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:52.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:52.705][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-08-10 16:03:52.706][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:52.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-08-10 16:03:52.708][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:52.709][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:52.709][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:52.710][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:52.711][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:52.711][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:52.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:52.723][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-08-10 16:03:52.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:52.726][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:52.727][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-08-10 16:03:53.059][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-08-10 16:03:53.402][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:53.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-08-10 16:03:53.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-08-10 16:03:53.409][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-08-10 16:03:53.411][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:53.412][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:53.413][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:53.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.431][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:53.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:53.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:53.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:53.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:53.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:53.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:53.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:53.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.461][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:53.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.474][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:53.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:53.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.480][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:53.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:53.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:53.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:53.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:53.532][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-08-10 16:03:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:53.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:53.560][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:53.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.577][private$selectFields]
biodb.TRACE[2024-08-10 16:03:53.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:53.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:53.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:03:53.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.618][private$selectFields]
biodb.TRACE[2024-08-10 16:03:53.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:53.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:53.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.627][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.631][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:53.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.658][private$selectFields]
biodb.TRACE[2024-08-10 16:03:53.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:53.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:53.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.667][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:53.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.670][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:03:53.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:53.682][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:53.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:53.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:53.696][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:53.697][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:53.698][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:54.043][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:54.700][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:54.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-08-10 16:03:54.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-08-10 16:03:54.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:54.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:54.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:54.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:54.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:54.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:54.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:54.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:54.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:54.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:54.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:54.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:54.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:54.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:54.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:54.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:54.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:54.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:54.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:54.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:54.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:54.762][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-08-10 16:03:54.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:54.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-08-10 16:03:54.765][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:54.766][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:54.767][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:54.768][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:54.768][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:54.769][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:54.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:54.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:54.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:54.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:54.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:54.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:54.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:54.779][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-08-10 16:03:54.781][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:54.782][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:54.783][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-08-10 16:03:55.120][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-08-10 16:03:55.451][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:55.453][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-08-10 16:03:55.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-08-10 16:03:55.457][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-08-10 16:03:55.459][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:55.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:55.460][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:55.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.477][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:55.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:55.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.484][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:55.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:55.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:55.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:55.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:55.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:55.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.506][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:55.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.518][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:55.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:55.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:55.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:55.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:55.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:55.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.566][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-08-10 16:03:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:55.585][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-08-10 16:03:55.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:55.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-08-10 16:03:55.588][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:55.589][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:55.589][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:55.590][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:55.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:55.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:55.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:55.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-08-10 16:03:55.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:55.605][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:55.606][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-08-10 16:03:55.936][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-08-10 16:03:56.266][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:56.268][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-08-10 16:03:56.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-08-10 16:03:56.273][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-08-10 16:03:56.274][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:56.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:56.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:56.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.287][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.293][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:56.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:56.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:56.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:56.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:56.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:56.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:56.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:56.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:56.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:56.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:56.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:56.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.321][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.321][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:56.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.344][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:56.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:56.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:56.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:56.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:56.357][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:56.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:56.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:56.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.391][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-08-10 16:03:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:56.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.409][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-08-10 16:03:56.410][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:56.411][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-08-10 16:03:56.412][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:56.413][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:56.414][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:56.414][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:56.415][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:56.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:56.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-08-10 16:03:56.429][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:56.430][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:56.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-08-10 16:03:56.774][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-08-10 16:03:57.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:57.109][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-08-10 16:03:57.112][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-08-10 16:03:57.114][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-08-10 16:03:57.115][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:57.116][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:57.117][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:57.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.128][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.134][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:57.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:57.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.140][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:57.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:57.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.142][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:57.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:57.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:57.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:57.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.162][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:57.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.175][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:57.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:57.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:57.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:57.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:57.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:57.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.223][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-08-10 16:03:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:57.242][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-08-10 16:03:57.243][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:57.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-08-10 16:03:57.245][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:57.246][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:57.247][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:57.247][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:57.248][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:57.249][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:57.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:57.259][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-08-10 16:03:57.261][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:57.262][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:57.269][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-08-10 16:03:57.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-08-10 16:03:57.948][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:57.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-08-10 16:03:57.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-08-10 16:03:57.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-08-10 16:03:57.956][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:57.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:57.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:57.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.968][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.975][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:57.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:57.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.981][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:57.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:57.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:57.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:57.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:57.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:58.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.002][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:58.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.013][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:58.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:58.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:58.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:58.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.020][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:58.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:58.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:58.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:58.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.063][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-08-10 16:03:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:58.082][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-08-10 16:03:58.083][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:58.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-08-10 16:03:58.085][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:58.086][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:58.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:58.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:58.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:58.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:58.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:58.100][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-08-10 16:03:58.102][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:58.103][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:58.104][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-08-10 16:03:58.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-08-10 16:03:58.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:58.779][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-08-10 16:03:58.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-08-10 16:03:58.784][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-08-10 16:03:58.785][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:58.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:58.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:58.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.804][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:58.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:58.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:58.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:58.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:58.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:58.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:58.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:58.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:58.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:58.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.833][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:58.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:58.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:58.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:58.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:58.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:58.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:58.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:58.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.907][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-08-10 16:03:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:58.925][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-08-10 16:03:58.926][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:58.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-08-10 16:03:58.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:58.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:58.930][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:58.930][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:58.931][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:58.932][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:58.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:58.942][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-08-10 16:03:58.944][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:58.945][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:58.946][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-08-10 16:03:59.291][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-08-10 16:03:59.625][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:59.627][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-08-10 16:03:59.629][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-08-10 16:03:59.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-08-10 16:03:59.633][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:59.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:59.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:59.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.652][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:59.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:59.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.658][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:59.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:59.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:59.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:59.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:59.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:59.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:59.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:59.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.680][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:59.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:59.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:59.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:59.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:59.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:59.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.701][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:59.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:59.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.741][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-08-10 16:03:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:59.759][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-08-10 16:03:59.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:59.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-08-10 16:03:59.762][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:59.763][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:59.764][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:59.764][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:59.765][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:59.766][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:59.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:59.777][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-08-10 16:03:59.779][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:59.780][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:59.781][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-08-10 16:04:00.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-08-10 16:04:00.459][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:00.461][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-08-10 16:04:00.463][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-08-10 16:04:00.465][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-08-10 16:04:00.466][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:00.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:00.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:00.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:00.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.496][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:00.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:00.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:00.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:00.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:00.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:00.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:00.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.524][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:00.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:00.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.537][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:00.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:00.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.543][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:00.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:00.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:00.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:00.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:00.585][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-08-10 16:04:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:00.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:00.603][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-08-10 16:04:00.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:00.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-08-10 16:04:00.606][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:00.607][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:00.608][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:00.609][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:00.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:00.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:00.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:00.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-08-10 16:04:00.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:00.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:00.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-08-10 16:04:00.967][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-08-10 16:04:01.301][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:01.303][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-08-10 16:04:01.305][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-08-10 16:04:01.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-08-10 16:04:01.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:01.309][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:01.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:01.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:01.321][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.327][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:01.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:01.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.333][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:01.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:01.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:01.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:01.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.352][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.354][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:01.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:01.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.366][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:01.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:01.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:01.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:01.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:01.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:01.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:01.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:01.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:01.423][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-08-10 16:04:01.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:01.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:01.442][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-08-10 16:04:01.442][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:01.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-08-10 16:04:01.444][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:01.445][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:01.446][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:01.447][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:01.447][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:01.448][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:01.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:01.458][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-08-10 16:04:01.460][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:01.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:01.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-08-10 16:04:01.860][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-08-10 16:04:02.191][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:02.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-08-10 16:04:02.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-08-10 16:04:02.197][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-08-10 16:04:02.199][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:02.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:02.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:02.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:02.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:02.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:02.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:02.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:02.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:02.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:02.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.217][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:02.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:02.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:02.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:02.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:02.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:02.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:02.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:02.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:02.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:02.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.240][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:02.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:02.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.252][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:02.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:02.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.258][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:02.259][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:02.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:02.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:02.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:02.298][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-08-10 16:04:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:02.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:02.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:02.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:02.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:02.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:02.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:02.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:02.317][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-08-10 16:04:02.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:02.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-08-10 16:04:02.319][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:02.320][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:02.321][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:02.322][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:02.323][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:02.323][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:02.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:02.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:02.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:02.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:02.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:02.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:02.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:02.334][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-08-10 16:04:02.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:02.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:02.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-08-10 16:04:02.781][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-08-10 16:04:03.118][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:03.119][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-08-10 16:04:03.122][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-08-10 16:04:03.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-08-10 16:04:03.125][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:03.126][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:03.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:03.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:03.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:03.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:03.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:03.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:03.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:03.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:03.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:03.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:03.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:03.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.150][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:03.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:03.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:03.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:03.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.165][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:03.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:03.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:03.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:03.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:03.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:03.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:03.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:03.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:03.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:03.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:03.233][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-08-10 16:04:03.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:03.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:03.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:03.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:03.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:03.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:03.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:03.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:03.251][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-08-10 16:04:03.252][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:03.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-08-10 16:04:03.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:03.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:03.256][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:03.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:03.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:03.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:03.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:03.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:03.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:03.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:03.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:03.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:03.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:03.268][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-08-10 16:04:03.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:03.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:03.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-08-10 16:04:03.611][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-08-10 16:04:03.945][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:03.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-08-10 16:04:03.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-08-10 16:04:03.951][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-08-10 16:04:03.953][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:03.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:03.954][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:03.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:03.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:03.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:03.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:03.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:03.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:03.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:03.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.972][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:03.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.978][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:03.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:03.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:03.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:03.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:03.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:03.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:03.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:03.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.000][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:04.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:04.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.013][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:04.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:04.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.019][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:04.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:04.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:04.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:04.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:04.062][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-08-10 16:04:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:04.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.081][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-08-10 16:04:04.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:04.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-08-10 16:04:04.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:04.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:04.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:04.086][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:04.087][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:04.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:04.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.107][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-08-10 16:04:04.110][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:04.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:04.111][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-08-10 16:04:04.443][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-08-10 16:04:04.775][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:04.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-08-10 16:04:04.780][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-08-10 16:04:04.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-08-10 16:04:04.783][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:04.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:04.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:04.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:04.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.801][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:04.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:04.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.807][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:04.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:04.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:04.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:04.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:04.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:04.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:04.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:04.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:04.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.829][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:04.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:04.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:04.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:04.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:04.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:04.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:04.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:04.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:04.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:04.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:04.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:04.889][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-08-10 16:04:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:04.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:04.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:04.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.907][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-08-10 16:04:04.908][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:04.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-08-10 16:04:04.910][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:04.911][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:04.912][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:04.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:04.913][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:04.914][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:04.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.925][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-08-10 16:04:04.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:04.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:04.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-08-10 16:04:05.260][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-08-10 16:04:05.590][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:05.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-08-10 16:04:05.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-08-10 16:04:05.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-08-10 16:04:05.598][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:05.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:05.599][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:05.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:05.610][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.617][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:05.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:05.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:05.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.623][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:05.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:05.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:05.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:05.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.644][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:05.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:05.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.656][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:05.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:05.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:05.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:05.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:05.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:05.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:05.715][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-08-10 16:04:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:05.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:05.733][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-08-10 16:04:05.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:05.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-08-10 16:04:05.736][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:05.736][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:05.737][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:05.738][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:05.739][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:05.740][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:05.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:05.750][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-08-10 16:04:05.752][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:05.753][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:05.754][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-08-10 16:04:06.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-08-10 16:04:06.433][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:06.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-08-10 16:04:06.437][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-08-10 16:04:06.439][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-08-10 16:04:06.441][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:06.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:06.443][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:06.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.454][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.460][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:06.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:06.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:06.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:06.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:06.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:06.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:06.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:06.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.488][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:06.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.500][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:06.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:06.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.506][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:06.507][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:06.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:06.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:06.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:06.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:06.548][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-08-10 16:04:06.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:06.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:06.567][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-08-10 16:04:06.568][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:06.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-08-10 16:04:06.570][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:06.571][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:06.572][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:06.573][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:06.573][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:06.574][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:06.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:06.584][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-08-10 16:04:06.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:06.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:06.588][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-08-10 16:04:06.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-08-10 16:04:07.261][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:07.263][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-08-10 16:04:07.265][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-08-10 16:04:07.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-08-10 16:04:07.269][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:07.270][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:07.270][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:07.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:07.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:07.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:07.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:07.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:07.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:07.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:07.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.304][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:07.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.306][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:07.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:07.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:07.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:07.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:07.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:07.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:07.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:07.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:07.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.332][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:07.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:07.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:07.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:07.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.344][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:07.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:07.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:07.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:07.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:07.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:07.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:07.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:07.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:07.392][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-08-10 16:04:07.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:07.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:07.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:07.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:07.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:07.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:07.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:07.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:07.411][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-08-10 16:04:07.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:07.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-08-10 16:04:07.413][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:07.414][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:07.415][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:07.416][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:07.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:07.417][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:07.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:07.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:07.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:07.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:07.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:07.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:07.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:07.427][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-08-10 16:04:07.429][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:07.430][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:07.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-08-10 16:04:07.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-08-10 16:04:08.115][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:08.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-08-10 16:04:08.119][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-08-10 16:04:08.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-08-10 16:04:08.123][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:08.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:08.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:08.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:08.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.142][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.170][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:08.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:08.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:08.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:08.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:08.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:08.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:08.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:08.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:08.241][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-08-10 16:04:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:08.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:08.259][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-08-10 16:04:08.260][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:08.261][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-08-10 16:04:08.262][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:08.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:08.263][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:08.264][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:08.265][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:08.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:08.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:08.276][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-08-10 16:04:08.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:08.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:08.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-08-10 16:04:08.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-08-10 16:04:08.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:08.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-08-10 16:04:08.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-08-10 16:04:08.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-08-10 16:04:08.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:08.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:08.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:08.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:08.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.969][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.992][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.996][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.996][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:08.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.008][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:09.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:09.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:09.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:09.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.014][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:09.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:09.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:09.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:09.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:09.055][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-08-10 16:04:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:09.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:09.074][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-08-10 16:04:09.075][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:09.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-08-10 16:04:09.077][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:09.078][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:09.079][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:09.080][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:09.081][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:09.081][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:09.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:09.092][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-08-10 16:04:09.094][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:09.095][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:09.096][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-08-10 16:04:09.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-08-10 16:04:09.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:09.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-08-10 16:04:09.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-08-10 16:04:09.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-08-10 16:04:09.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:09.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:09.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:09.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:09.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.969][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:09.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:09.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:09.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:09.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:09.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:09.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:09.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:09.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:09.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.007][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.020][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.069][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-08-10 16:04:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:10.088][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-08-10 16:04:10.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:10.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-08-10 16:04:10.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:10.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:10.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:10.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:10.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:10.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:10.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:10.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-08-10 16:04:10.108][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:10.109][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:10.110][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-08-10 16:04:10.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-08-10 16:04:10.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:10.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-08-10 16:04:10.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-08-10 16:04:10.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-08-10 16:04:10.863][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:10.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:10.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:10.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:10.876][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.883][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:10.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:10.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.889][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:10.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:10.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:10.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:10.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:10.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.911][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.925][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.931][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.974][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-08-10 16:04:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.002][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-08-10 16:04:11.003][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:11.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-08-10 16:04:11.006][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:11.007][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:11.008][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:11.008][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:11.009][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:11.010][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:11.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.021][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-08-10 16:04:11.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:11.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:11.025][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-08-10 16:04:11.356][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-08-10 16:04:11.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:11.702][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-08-10 16:04:11.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-08-10 16:04:11.706][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-08-10 16:04:11.707][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:11.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:11.709][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:11.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.719][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.722][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.725][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:11.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:11.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.732][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:11.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:11.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.738][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:11.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:11.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.752][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:11.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:11.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.760][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.764][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:11.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:11.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.770][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:11.771][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:11.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.773][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:11.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:11.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:11.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:11.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.814][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-08-10 16:04:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.832][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-08-10 16:04:11.833][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:11.834][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-08-10 16:04:11.835][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:11.835][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:11.836][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:11.837][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:11.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:11.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:11.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.850][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-08-10 16:04:11.852][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:11.853][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:11.854][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-08-10 16:04:12.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-08-10 16:04:12.526][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:12.528][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-08-10 16:04:12.530][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-08-10 16:04:12.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-08-10 16:04:12.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:12.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:12.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:12.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.546][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.552][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:12.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:12.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.558][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:12.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:12.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:12.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:12.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:12.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:12.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:12.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:12.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.582][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:12.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:12.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.595][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:12.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:12.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:12.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:12.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:12.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:12.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:12.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:12.659][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-08-10 16:04:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:12.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:12.678][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-08-10 16:04:12.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:12.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-08-10 16:04:12.681][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:12.682][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:12.683][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:12.683][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:12.684][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:12.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:12.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:12.696][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-08-10 16:04:12.698][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:12.699][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:12.700][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-08-10 16:04:13.041][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-08-10 16:04:13.374][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:13.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-08-10 16:04:13.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-08-10 16:04:13.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-08-10 16:04:13.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:13.383][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:13.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:13.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:13.394][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.401][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:13.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:13.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:13.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:13.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:13.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:13.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:13.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:13.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.422][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:13.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:13.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.428][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.429][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:13.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:13.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:13.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:13.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:13.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:13.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.449][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:13.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:13.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:13.454][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:13.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:13.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:13.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:13.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:13.490][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-08-10 16:04:13.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:13.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:13.508][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-08-10 16:04:13.508][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:13.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-08-10 16:04:13.510][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:13.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:13.512][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:13.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:13.514][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:13.514][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:13.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:13.525][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-08-10 16:04:13.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:13.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:13.528][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-08-10 16:04:13.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-08-10 16:04:14.200][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:14.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-08-10 16:04:14.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-08-10 16:04:14.217][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-08-10 16:04:14.219][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:14.220][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:14.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:14.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:14.231][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.237][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:14.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:14.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.243][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:14.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:14.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:14.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.260][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.263][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:14.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:14.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.275][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:14.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:14.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:14.282][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:14.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.288][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:14.289][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:14.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:14.324][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-08-10 16:04:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:14.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:14.342][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-08-10 16:04:14.343][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:14.344][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-08-10 16:04:14.345][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:14.346][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:14.347][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:14.348][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:14.348][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:14.349][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:14.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:14.360][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-08-10 16:04:14.362][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:14.362][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:14.363][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-08-10 16:04:14.703][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-08-10 16:04:15.033][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:15.035][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-08-10 16:04:15.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-08-10 16:04:15.040][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-08-10 16:04:15.041][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:15.042][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:15.043][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:15.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:15.054][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.061][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.093][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.107][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.115][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:15.173][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-08-10 16:04:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:15.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:15.191][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-08-10 16:04:15.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:15.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-08-10 16:04:15.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:15.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:15.196][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:15.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:15.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:15.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:15.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:15.209][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-08-10 16:04:15.210][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:15.211][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:15.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-08-10 16:04:15.555][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-08-10 16:04:15.889][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:15.891][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-08-10 16:04:15.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-08-10 16:04:15.896][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-08-10 16:04:15.897][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:15.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:15.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:15.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:15.910][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.916][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.923][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.938][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.943][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.948][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.960][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.011][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-08-10 16:04:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:16.029][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-08-10 16:04:16.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:16.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-08-10 16:04:16.032][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:16.032][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:16.033][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:16.034][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:16.035][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:16.036][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:16.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:16.046][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-08-10 16:04:16.048][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:16.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:16.050][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-08-10 16:04:16.393][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-08-10 16:04:16.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:16.726][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-08-10 16:04:16.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-08-10 16:04:16.730][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-08-10 16:04:16.732][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:16.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:16.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:16.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.744][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.762][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:16.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:16.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:16.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:16.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:16.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:16.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:16.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.790][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:16.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:16.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:16.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.802][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:16.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:16.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:16.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:16.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:16.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:16.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.850][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-08-10 16:04:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:16.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.911][private$selectFields]
biodb.TRACE[2024-08-10 16:04:16.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:16.913][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:16.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.925][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:16.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:16.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.951][private$selectFields]
biodb.TRACE[2024-08-10 16:04:16.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:16.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:16.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.961][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.964][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:16.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:16.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.991][private$selectFields]
biodb.TRACE[2024-08-10 16:04:16.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:16.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:16.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:16.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:17.022][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:17.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:17.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:17.036][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:17.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:17.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:17.039][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:17.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.114][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:17.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.131][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.142][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:17.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.173][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.182][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.186][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:17.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.213][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.222][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.226][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.236][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:17.236][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:17.237][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:17.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.264][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:17.272][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:17.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:17.275][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:17.276][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:17.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.400][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:17.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.416][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.428][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.429][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:17.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.455][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.465][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.468][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:17.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.494][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-08-10 16:04:17.525][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:17.526][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:17.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:17.541][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:17.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-08-10 16:04:17.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:17.544][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-08-10 16:04:17.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.618][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:17.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.635][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.645][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-08-10 16:04:17.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.673][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.675][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.681][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:17.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.712][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:04:17.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:17.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:17.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:17.750][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:17.751][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-08-10 16:04:17.752][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:17.753][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-08-10 16:04:17.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.846][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:17.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.862][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.875][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-08-10 16:04:17.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.901][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.915][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-08-10 16:04:17.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.941][private$selectFields]
biodb.TRACE[2024-08-10 16:04:17.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:17.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:17.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.948][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.950][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:17.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-08-10 16:04:17.964][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:17.965][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:17.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.991][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:17.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:17.994][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:17.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:17.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:17.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:18.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:18.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:18.003][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:18.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.063][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:18.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.080][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:18.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.119][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.119][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.129][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:18.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.160][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.169][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:18.184][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:18.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:18.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:18.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.199][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:18.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:04:18.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:18.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:04:18.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:18.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.278][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:18.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.328][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.337][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:18.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.369][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.377][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.379][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.382][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:18.394][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:18.394][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:18.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:18.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:18.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:04:18.411][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:18.412][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:04:18.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.468][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:18.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.484][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:18.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.524][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:04:18.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.571][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:04:18.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:18.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:18.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:18.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.625][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:18.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-08-10 16:04:18.628][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:18.629][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-08-10 16:04:18.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:18.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.809][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:18.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.860][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:18.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.903][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.913][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:18.931][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:18.932][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:18.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:18.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.947][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:18.948][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-08-10 16:04:18.949][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:18.950][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-08-10 16:04:18.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.508][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:19.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.524][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:19.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.568][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:19.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.625][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:19.660][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:19.661][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:19.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:19.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:19.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:19.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:19.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:19.680][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:19.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.755][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:19.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.772][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:19.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.814][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:19.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.857][private$selectFields]
biodb.TRACE[2024-08-10 16:04:19.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:19.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:19.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:19.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.871][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:19.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:19.882][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:04:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:04:19.912][biodb::testThat]
biodb.INFO [2024-08-10 16:04:19.913][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-08-10 16:04:19.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:04:19.914][biodb::testThat]
biodb.TRACE[2024-08-10 16:04:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:19.981][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:19.983][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:19.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:04:19.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:19.986][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:04:19.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:20.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:20.014][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:20.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:04:20.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:20.017][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:04:20.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:20.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:20.055][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:20.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.137][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.138][private$selectFields]
biodb.TRACE[2024-08-10 16:04:20.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:20.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:20.140][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.141][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.161][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.170][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.173][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.175][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.184][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.208][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.211][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.217][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:20.218][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:20.218][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.221][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.227][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.243][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.246][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.253][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-08-10 16:04:20.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.631][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.631][private$selectFields]
biodb.TRACE[2024-08-10 16:04:20.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:20.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:20.633][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.637][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.650][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.652][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.653][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.658][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.664][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.667][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.669][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.675][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.684][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.691][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.699][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.700][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.701][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.704][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.709][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.727][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.729][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.735][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:20.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.895][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.926][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.927][private$selectFields]
biodb.TRACE[2024-08-10 16:04:20.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:20.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:20.929][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:20.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.932][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.938][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.950][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.952][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.955][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.956][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.957][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.958][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.964][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.967][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.973][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.984][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.990][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.993][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.999][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:20.999][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:21.000][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.002][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.003][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.005][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.008][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.023][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.025][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.032][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:21.143][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:21.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:21.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:21.156][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:21.159][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:21.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:04:21.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:21.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:04:21.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:21.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:21.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:04:21.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:21.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:04:21.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:21.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.316][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.334][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.334][private$selectFields]
biodb.TRACE[2024-08-10 16:04:21.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:21.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:21.336][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.337][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.340][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.350][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.361][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.363][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.367][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.367][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.369][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.375][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.377][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.378][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.383][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.385][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.391][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.392][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.393][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.394][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.396][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.399][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.401][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.402][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.407][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.408][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.409][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.412][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.414][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.417][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.420][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.422][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.428][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.429][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.442][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.443][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:21.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.634][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.635][private$selectFields]
biodb.TRACE[2024-08-10 16:04:21.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:21.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:21.637][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.641][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.658][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.663][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.666][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.672][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.675][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.680][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.689][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.691][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.697][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.699][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.702][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.705][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.706][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.707][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.709][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.715][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.733][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.735][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.739][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.741][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:21.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.896][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.930][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.931][private$selectFields]
biodb.TRACE[2024-08-10 16:04:21.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:21.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:21.933][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:21.934][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.936][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.936][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.942][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.947][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.963][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.968][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.971][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.002][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.002][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:22.003][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:22.004][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.007][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.012][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.021][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.029][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.034][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.035][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:22.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:22.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:22.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:22.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:22.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:22.155][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:04:22.156][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:22.157][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:04:22.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:22.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:22.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:04:22.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:22.301][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:04:22.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:22.358][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:22.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.439][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.439][private$selectFields]
biodb.TRACE[2024-08-10 16:04:22.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:22.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:22.442][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.445][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.451][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.462][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.468][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.471][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.477][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.485][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.499][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.502][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.505][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.511][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.512][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.512][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.515][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.530][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.532][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.538][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.547][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-08-10 16:04:22.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.742][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.743][private$selectFields]
biodb.TRACE[2024-08-10 16:04:22.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:22.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:22.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:22.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.748][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.749][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.754][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.772][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.774][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.775][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.780][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.783][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.789][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.810][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.819][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:22.820][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:22.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.823][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.829][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.843][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.845][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.851][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:22.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-08-10 16:04:22.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.031][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.031][private$selectFields]
biodb.TRACE[2024-08-10 16:04:23.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:23.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:23.033][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.036][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.037][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.064][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.067][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.073][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.075][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.076][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.081][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.090][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.098][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.102][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.104][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.108][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:23.108][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:23.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.112][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.117][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.126][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.139][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:23.236][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:23.237][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:23.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:23.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:23.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:23.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:04:23.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:23.257][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:04:23.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:23.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:23.282][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:23.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:04:23.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:23.284][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:04:23.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:23.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:23.319][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:23.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.401][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.402][private$selectFields]
biodb.TRACE[2024-08-10 16:04:23.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:23.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:23.404][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.404][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.407][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.409][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.412][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.424][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.426][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.429][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.430][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.432][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.432][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.438][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.438][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.440][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.442][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.443][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.467][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.473][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.474][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.476][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:23.477][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:23.477][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.486][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.502][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.508][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-08-10 16:04:23.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.691][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.692][private$selectFields]
biodb.TRACE[2024-08-10 16:04:23.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:23.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:23.694][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.694][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.697][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.702][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.713][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.719][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.727][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.727][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.732][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.733][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.738][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.752][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.757][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.760][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.765][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.766][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.768][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.768][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.769][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.771][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.773][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.777][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.787][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.790][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.792][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.795][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.800][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:23.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.988][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.988][private$selectFields]
biodb.TRACE[2024-08-10 16:04:23.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:23.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:23.990][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:23.991][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.993][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.999][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.007][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.014][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.017][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.022][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.023][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.025][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.027][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.028][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.048][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.051][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.056][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.057][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.058][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.059][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:24.060][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:24.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.063][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.083][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.086][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.092][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:24.195][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:24.196][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:24.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:24.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:24.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:24.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:04:24.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:24.216][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:04:24.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:24.253][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:24.254][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:04:24.255][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:24.256][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:04:24.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.307][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:24.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.390][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.391][private$selectFields]
biodb.TRACE[2024-08-10 16:04:24.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:24.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:24.393][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.396][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.396][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.402][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.405][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.408][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.412][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.415][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.422][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.431][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.432][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.435][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.438][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.445][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.470][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.473][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.480][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.480][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.483][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.484][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.484][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.487][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.493][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.505][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.510][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.513][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.518][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:24.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.722][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.723][private$selectFields]
biodb.TRACE[2024-08-10 16:04:24.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:24.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:24.725][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.726][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.729][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.733][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.734][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.745][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.746][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.750][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.753][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.758][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.759][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.764][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.774][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.785][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.788][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.793][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.794][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:24.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.796][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.797][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:24.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.800][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.805][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.822][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.824][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.830][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:24.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.943][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:24.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.029][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.029][private$selectFields]
biodb.TRACE[2024-08-10 16:04:25.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:25.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:25.031][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.032][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.035][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.063][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.069][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.074][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.075][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.077][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.081][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.087][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.106][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.108][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.114][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.114][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.116][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:25.117][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:25.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.121][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.134][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.134][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.140][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.142][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.142][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.148][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:25.251][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:25.252][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:25.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:25.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:25.265][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:25.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:04:25.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:25.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:04:25.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:25.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:25.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:04:25.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:25.410][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:04:25.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.463][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:25.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.541][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.542][private$selectFields]
biodb.TRACE[2024-08-10 16:04:25.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:25.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:25.544][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.547][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.569][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.572][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.577][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.578][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.580][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.583][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.604][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.607][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.615][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.616][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.619][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.640][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.643][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.646][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.648][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-08-10 16:04:25.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.837][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.838][private$selectFields]
biodb.TRACE[2024-08-10 16:04:25.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:25.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:25.840][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:25.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.844][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.850][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.875][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.876][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.885][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.891][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.899][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.902][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.908][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.911][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.917][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.918][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:25.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.920][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:25.920][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:25.921][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.924][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.929][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.943][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.946][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.948][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.952][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-08-10 16:04:26.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.138][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.139][private$selectFields]
biodb.TRACE[2024-08-10 16:04:26.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:26.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:26.141][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.141][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.150][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.168][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.171][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.174][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.175][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.177][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.179][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.196][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.202][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.202][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.204][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.206][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.210][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.211][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:26.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.212][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.213][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:26.213][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:26.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.217][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.231][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.231][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.240][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.246][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:26.360][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:26.361][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:04:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:26.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:26.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:26.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:26.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:26.418][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:26.420][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:26.422][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:26.423][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:26.424][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:26.425][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:26.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.477][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:26.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.554][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.555][private$selectFields]
biodb.TRACE[2024-08-10 16:04:26.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:26.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:26.557][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.561][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.566][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.575][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.583][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.590][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.592][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.594][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.600][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.621][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.624][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.627][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.629][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.630][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.633][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.639][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.646][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.650][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.652][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.655][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.658][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.664][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:26.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:26.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.854][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.855][private$selectFields]
biodb.TRACE[2024-08-10 16:04:26.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:26.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:26.857][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.858][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.861][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.882][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.885][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.894][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.909][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.915][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.918][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.924][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.925][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:26.926][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.929][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.930][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.947][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.948][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.954][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.955][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.963][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.031][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:27.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.178][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.178][private$selectFields]
biodb.TRACE[2024-08-10 16:04:27.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:27.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:27.181][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.181][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.184][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.206][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.217][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.231][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.239][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.242][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.244][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.247][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.248][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:27.249][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:27.249][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.252][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.258][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.271][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.274][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.277][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.279][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:27.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:27.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:27.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:27.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:27.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:27.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:27.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:04:27.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:27.399][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:04:27.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:27.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:27.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:27.452][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:27.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.530][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.531][private$selectFields]
biodb.TRACE[2024-08-10 16:04:27.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:27.532][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:27.533][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.537][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.542][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.553][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.562][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.571][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.596][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.598][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.599][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.607][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.608][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.608][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.611][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.617][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.634][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.637][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.643][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:27.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.839][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.840][private$selectFields]
biodb.TRACE[2024-08-10 16:04:27.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:27.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:27.842][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:27.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.846][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.863][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.869][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.871][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.877][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.880][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.897][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.899][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.903][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.905][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.909][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.911][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:27.912][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:27.913][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.915][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.929][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.935][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.944][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:28.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.127][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.128][private$selectFields]
biodb.TRACE[2024-08-10 16:04:28.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:28.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:28.130][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.130][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.156][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.157][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.162][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.167][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.173][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.181][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.190][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.192][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.198][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:28.199][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:28.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.203][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.209][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.224][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.227][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.231][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.232][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:28.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:28.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:28.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:28.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:28.353][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:28.354][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:04:28.355][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:28.357][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:04:28.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:28.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:28.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:28.410][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:28.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.490][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.490][private$selectFields]
biodb.TRACE[2024-08-10 16:04:28.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:28.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:28.492][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.493][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.496][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.510][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.519][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.530][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.536][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.558][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.561][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.567][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.568][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.571][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.572][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.588][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.593][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.602][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:28.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.653][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-08-10 16:04:28.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.792][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.792][private$selectFields]
biodb.TRACE[2024-08-10 16:04:28.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:28.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:28.794][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:28.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.798][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.812][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.820][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.821][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.823][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.828][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.830][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.831][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.832][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.833][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.836][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.848][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.853][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.854][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.862][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:28.862][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:28.863][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.866][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.871][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.874][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.875][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.886][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.895][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-08-10 16:04:28.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.080][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.081][private$selectFields]
biodb.TRACE[2024-08-10 16:04:29.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:29.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:29.083][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.084][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.086][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.092][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.104][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.110][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.113][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.121][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.127][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.148][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.152][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.154][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:29.155][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:29.156][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.158][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.179][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.183][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.189][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:29.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:29.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:29.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:29.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:29.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:29.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:29.320][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:29.321][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:29.323][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:29.326][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:29.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:29.327][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:29.328][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:29.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:29.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:29.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:29.382][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:29.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.467][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.467][private$selectFields]
biodb.TRACE[2024-08-10 16:04:29.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:29.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:29.469][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.473][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.478][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.496][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.505][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.506][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.511][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.530][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.532][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.538][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.547][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.548][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.550][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.550][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.551][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.554][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.560][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.577][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.580][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.585][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:29.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:29.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.783][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.784][private$selectFields]
biodb.TRACE[2024-08-10 16:04:29.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:29.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:29.786][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.790][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.795][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.804][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.806][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.812][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.815][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.820][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.821][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.823][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.826][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.843][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.845][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.848][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.851][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.856][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.857][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.859][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.860][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:29.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.863][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.887][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.890][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.895][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.007][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:30.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.088][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.089][private$selectFields]
biodb.TRACE[2024-08-10 16:04:30.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:30.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:30.091][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.094][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.100][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.117][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.120][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.125][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.126][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.128][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.131][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.131][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.145][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.148][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.154][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.156][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.162][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.163][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.165][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:30.166][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:30.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.169][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.175][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.188][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.197][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:30.302][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:30.302][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:30.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:30.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:30.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:30.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:04:30.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:30.318][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:04:30.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:30.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:30.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:30.371][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:30.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.456][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.457][private$selectFields]
biodb.TRACE[2024-08-10 16:04:30.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:30.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:30.463][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.464][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.467][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.488][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.491][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.496][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.497][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.499][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.502][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.508][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.519][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.524][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.527][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.532][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.533][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.535][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.535][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.539][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.544][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.560][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.563][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.568][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:30.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.780][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.780][private$selectFields]
biodb.TRACE[2024-08-10 16:04:30.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:30.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:30.782][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:30.783][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.784][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.786][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.810][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.816][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.817][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.822][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.822][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.827][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.845][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.853][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:30.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.856][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:30.856][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:30.857][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.860][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.865][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.874][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.880][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.888][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:30.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.072][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.073][private$selectFields]
biodb.TRACE[2024-08-10 16:04:31.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:31.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:31.075][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.075][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.078][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.084][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.098][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.101][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.108][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.110][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.110][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.115][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.121][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.131][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.137][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.140][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.142][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.145][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.146][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.148][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:31.149][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:31.149][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.152][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.179][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.184][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:31.281][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:31.281][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:31.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:31.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:31.295][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:31.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:04:31.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:31.298][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:04:31.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:31.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:31.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:31.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:31.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.436][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.437][private$selectFields]
biodb.TRACE[2024-08-10 16:04:31.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:31.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:31.439][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.442][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.452][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.467][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.472][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.473][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.477][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.483][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.499][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.501][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.505][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.507][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.507][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.509][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.510][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.511][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.513][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.514][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.535][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.536][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.538][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.541][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.543][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-08-10 16:04:31.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.737][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.737][private$selectFields]
biodb.TRACE[2024-08-10 16:04:31.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:31.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:31.739][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:31.740][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.743][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.745][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.748][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.753][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.768][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.773][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.773][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.774][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.776][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.779][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.780][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.801][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.804][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.810][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.810][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.812][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:31.813][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:31.814][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.816][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.830][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.836][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.844][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-08-10 16:04:31.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.027][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:32.028][private$selectFields]
biodb.TRACE[2024-08-10 16:04:32.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:32.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:32.030][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:32.030][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.033][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.055][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.057][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.059][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.063][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.064][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.068][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.074][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.090][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.091][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.095][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.104][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.104][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:32.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.106][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:32.107][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:32.108][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.110][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.116][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.125][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.130][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.131][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.133][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.138][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.237][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:32.238][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:32.238][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:04:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.246][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:04:32.254][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:04:32.255][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-08-10 16:04:32.256][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-08-10 16:04:32.257][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:04:32.257][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:32.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:32.258][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:32.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:32.260][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:32.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1396 ]
>
> proc.time()
user system elapsed
53.956 2.657 174.713
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)